PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G00238.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 345aa    MW: 38186.2 Da    PI: 9.4122
Description DNA-binding storekeeper protein-related transcriptional regulator
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G00238.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573106.42.2e-33139229298
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                  ++qr+wseeDei+lLq++idfka+tg+sp+d+ d+f++++kksisf+vsk q+++Kir++K+K+ +++k        s++++hd+k+++l+ ++Wgs
  AT4G00238.1 139 HAQRVWSEEDEISLLQAMIDFKAETGTSPWDHKDRFFDIAKKSISFDVSKVQFFDKIRSFKRKYFGDRKV------RSVESDHDKKCLGLAVSFWGS 229
                  579****************************************************************999......899****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-22141228IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005730Cellular Componentnucleolus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000005anatomycultured plant cell
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASLENPAID SSSEFESSSE EISSSKESKP KEAPVTVPST KTLNSPSAAV AVSDDSESEK  60
QSFVLTRRKK KEGAAESPAV KSGKKEGAAE SPAVKSGNNE GATESPAVKS GKKRASEGTT  120
SRDMHVKRIK KEGDNKKGHA QRVWSEEDEI SLLQAMIDFK AETGTSPWDH KDRFFDIAKK  180
SISFDVSKVQ FFDKIRSFKR KYFGDRKVRS VESDHDKKCL GLAVSFWGSD GVSLETPVKK  240
KVKDESVLVK ANSKEKNVKP LVKEDEQVVI LGEDSEWFEE SFLVPVIASL GLDEYSVKKK  300
WSKVSVETKK RIQEKMKLVD AKKCELLLAN MDVLKEVTSV LTQTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671RRKKKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.755810.0bud| flower| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306785820.0
Genevisible255668_s_at0.0
Expression AtlasAT4G00238-
AtGenExpressAT4G00238-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed strongly in leaves and flowers, weakly in roots, and very weakly in stems. {ECO:0000269|PubMed:27031427}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds DNA in a sequence-specific manner, 5'-GCCT-3', to regulate the expression of PGR. Acts as a modulatory component for the glucose-triggered developmental leaf growth process. {ECO:0000269|PubMed:27031427}.
Function -- GeneRIF ? help Back to Top
  1. AtSTKL1 and AtSTKL2 function both as repressors of AtPGR transcription and as novel transcription factors in the Glc signaling pathway.[AtSTKL1]
    [PMID: 27031427]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G00238.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated upon glucose treatment. {ECO:0000269|PubMed:27031427}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G00238
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1189350.0AK118935.1 Arabidopsis thaliana At4g00238 mRNA for unknown protein, complete cds, clone: RAFL21-27-G01.
GenBankAL1614710.0AL161471.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 1.
GenBankAY0845360.0AY084536.1 Arabidopsis thaliana clone 11106 mRNA, complete sequence.
GenBankBT0056300.0BT005630.1 Arabidopsis thaliana clone U51279 unknown protein (At4g00238) mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankF5I100.0AF195115.1 Arabidopsis thaliana BAC F5I10.
GenBankIG005I100.0AF013293.1 Arabidopsis thaliana BAC IG005I10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_567159.10.0DNA-binding storekeeper protein-related transcriptional regulator
SwissprotQ8LG050.0STKLM_ARATH; Transcription factor STKL1
TrEMBLA0A178UZP90.0A0A178UZP9_ARATH; Uncharacterized protein
STRINGAT4G00238.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Representative plantOGRP4222523
Publications ? help Back to Top
  1. Pendle AF, et al.
    Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions.
    Mol. Biol. Cell, 2005. 16(1): p. 260-9
    [PMID:15496452]
  2. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]
  3. Reiland S, et al.
    Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.
    Plant Physiol., 2009. 150(2): p. 889-903
    [PMID:19376835]
  4. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]
  5. Chung MS, et al.
    Regulation of Arabidopsis thaliana plasma membrane glucose-responsive regulator (AtPGR) expression by A. thaliana storekeeper-like transcription factor, AtSTKL, modulates glucose response in Arabidopsis.
    Plant Physiol. Biochem., 2016. 104: p. 155-64
    [PMID:27031427]