PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574894.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 325aa    MW: 38207.9 Da    PI: 9.7078
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.2e-1312103198
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ffkv ++++  + + l +p +f+++h +g++ ++  +tl+ ++  +Wev    +k+ +  + + +GWkeF++   L +  fvvFk++++s f  +
  XP_012574894.1  12 FFKVILQKSIQEGK-LKVPQSFVRKHwQGIT-NP--ITLRLPNMTQWEVLW--EKTCDYdVCFCNGWKEFANYLSLSDSQFVVFKYEENSHF--N 98 
                     77887776666665.***********96663.54..9999999******99..777777799999*********************999999..7 PP

                     EEEE- CS
              B3  94 vkvfr 98 
                     v vf+
  XP_012574894.1  99 VIVFD 103
                     77776 PP
2B347.72.7e-15218306190
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     ff   +++ + ++++lv+p++f + h      e++  t+   + r+W+v l+ ++++ +++l++GW++F + n++k gD++vF l++   + 
  XP_012574894.1 218 FFISVIHKTYIQRDLLVIPRDFSKIHlH--RMEGRNATIFVDQDRTWNVDLKLTRND-QFTLSGGWNKFRHHNNVKYGDVCVFILNKIkGTV 306
                     666778889999**********977742..34445566666689*******888886.689**********************987643333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-197104IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-1111103No hitNo description
PROSITE profilePS5086310.09511105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.2E-1811104IPR015300DNA-binding pseudobarrel domain
PfamPF023625.8E-1012103IPR003340B3 DNA binding domain
SMARTSM010194.5E-712105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-17212314IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-18213314IPR015300DNA-binding pseudobarrel domain
CDDcd100173.24E-13218314No hitNo description
PfamPF023621.8E-12218306IPR003340B3 DNA binding domain
PROSITE profilePS5086314.142218316IPR003340B3 DNA binding domain
SMARTSM010193.1E-11218316IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSSQQFDHGV HFFKVILQKS IQEGKLKVPQ SFVRKHWQGI TNPITLRLPN MTQWEVLWEK  60
TCDYDVCFCN GWKEFANYLS LSDSQFVVFK YEENSHFNVI VFDKCGLEIT YPLRETSEKC  120
EDVDKSNYSL KIIEDPSSSR RKRPKSPPSS SKVYKKVKII SKERKECKHE KSKVLAHARF  180
YSSKHMDNVA GSSCGNILKR SRVLHEKVKN EFNCEKDFFI SVIHKTYIQR DLLVIPRDFS  240
KIHLHRMEGR NATIFVDQDR TWNVDLKLTR NDQFTLSGGW NKFRHHNNVK YGDVCVFILN  300
KIKGTVSFQV VIFSLEKEIT APYFE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574894.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012574894.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X3
RefseqXP_027185931.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
RefseqXP_027185933.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X3
RefseqXP_027185934.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X3
TrEMBLA0A1S3EHP10.0A0A1S3EHP1_CICAR; B3 domain-containing protein LOC_Os12g40080-like isoform X3
TrEMBLA0A3Q7XQD10.0A0A3Q7XQD1_CICAR; B3 domain-containing protein LOC_Os12g40080-like isoform X1
STRINGXP_004513365.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140231017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-17B3 family protein