PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012574770.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

ERF

Protein Properties

Length: 225aa MW: 25020.2 Da PI: 4.9629

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012574770.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60	5.6e-19	57	107	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++aa++ ++g XP_012574770.1 57 PVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFATAEMAARAHDAAALTIKG 107 68***998.******854...59*******************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.0E-13	57	107	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.906	58	115	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.5E-32	58	116	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-21	58	116	IPR016177	DNA-binding domain
SMART	SM00380	4.4E-35	58	121	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-10	59	70	IPR001471	AP2/ERF domain
CDD	cd00018	8.32E-21	59	117	No hit	No description
PRINTS	PR00367	1.8E-10	81	97	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MVQTDYNTNY NSPSPQSLSS SSEENRGKKR ERDNNLNNNR NSNVNRNGNS NCNSKHPVYR 60 GVRMRTWGKW VSEIREPRKK NRIWLGTFAT AEMAARAHDA AALTIKGTSA ILNFPELAGL 120 LPRPASKSPR DVQAAAAKAA SMVAPPSASS SSSSSSSSST PEDLDEIVEL PRLGTSYESP 180 DPNNEFVYFD PIDEWHYSYS IYDDEEENDY GYGGSDYFNF DIINA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-20	47	115	3	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012574770.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012574770.1	1e-165	dehydration-responsive element-binding protein 3-like
Swissprot	Q9M080	1e-56	ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBL	A0A1S3EG07	1e-164	A0A1S3EG07_CICAR; dehydration-responsive element-binding protein 3-like
STRING	XP_004513029.1	1e-142	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	6e-41	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]