PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012574451.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NAC | ||||||||
Protein Properties | Length: 366aa MW: 42150.1 Da PI: 4.8985 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.3 | 4.3e-55 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+e+d+y++ePwdL++ ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v XP_012574451.1 9 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIREIDLYRIEPWDLQErcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAV 102 69****************************.9***************953432233667************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ k +l+g++ktLvfykgrap+g+k+dW+mheyrle XP_012574451.1 103 YD-KMKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 138 **.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-60 | 5 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.279 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-28 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:1990110 | Biological Process | callus formation | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MMESMESCVP PGFRFHPTDE ELVGYYLRKK VASQKIDLDV IREIDLYRIE PWDLQERCRI 60 GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK AVYDKMKLIG MRKTLVFYKG 120 RAPNGQKSDW IMHEYRLESD ENGPPQEEGW VVCRAFKKRA TNSQTKNTIE RWDTSYFYEE 180 ASGMSSMVDP IDLISRQPQS FLAQSFNMCK QEIEAENNNN NNSLISCMHA DQFIQLPQLE 240 SPSLPLVKRP SIVSLVSENN DDNNDDDQKR LLLLSNNNVT TITTTNNNNN NNNNNNQVTT 300 DWRALDKFVA SQLSHEDEGV LSSFGTNILL PNSDMALMLM QGSRDEGNKF LNASSDCDIG 360 ICVFEK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-50 | 9 | 159 | 15 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00266 | DAP | Transfer from AT2G18060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012574451.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT147274 | 0.0 | BT147274.1 Medicago truncatula clone JCVI-FLMt-4I24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004512121.1 | 0.0 | NAC domain-containing protein 37 | ||||
Swissprot | Q9SL41 | 1e-158 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | A0A1S3EHM0 | 0.0 | A0A1S3EHM0_CICAR; NAC domain-containing protein 37 | ||||
STRING | XP_004512120.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 1e-145 | vascular related NAC-domain protein 1 |
Publications ? help Back to Top | |||
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