PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012573646.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARR-B
Protein Properties Length: 549aa    MW: 61884.9 Da    PI: 6.9294
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012573646.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.61.2e-27308362156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k +++WtpeLH++Fv+aveqL G+++A+P++il+lmkv+gLt+++v+SHLQkYR++
  XP_012573646.1 308 KMKVDWTPELHKKFVKAVEQL-GIDHAIPSRILDLMKVEGLTRHNVASHLQKYRMH 362
                     5689*****************.********************************96 PP
2Response_reg26.43.6e-10211262109
                     EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     l+ + +++ +   r  le  +y +v ++ d  eal  +  +   +++ ++ ++ +    G+++l+   +++ +lp i+ + +   +++ +++ +G
  XP_012573646.1  21 LLLEGDNASAAETRAKLEAMDY-NVSTFCDENEALSVISSRPegFHIAIVEVSSSScEGGFKFLE---NAK-DLPTIMTSNNHCLNTMMKCIALG 110
                     6666667777778888999***.***************777777*******99999445566554...444.899**9999999*********** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a +flsKp ++++l++
  XP_012573646.1 111 AVEFLSKPLSEDKLRN 126
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.31E-1416134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.8E-1516155No hitNo description
PROSITE profilePS5011019.95719132IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.62E-721131No hitNo description
PROSITE profilePS5129415.16305364IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-27306364IPR009057Homeodomain-like
SuperFamilySSF466894.66E-18307365IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-24308363IPR006447Myb domain, plants
PfamPF002499.0E-8311360IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MVCTANDLQQ WKDFPKGLKV LLLEGDNASA AETRAKLEAM DYNVSTFCDE NEALSVISSR  60
PEGFHIAIVE VSSSSCEGGF KFLENAKDLP TIMTSNNHCL NTMMKCIALG AVEFLSKPLS  120
EDKLRNIWQH VVHKAFNAGV SAQSESLKPV KESVVSILQL QTNNEQHESR ASIELEKVSR  180
FGDNDREHYP APSTPQLKQA ERLLDDGDCQ EQTNCSTEKE SGEHDGESKF IETTCENLNA  240
ESTPRQTKSE ITLVHKEEDF TDASKYESVV FRHPQNLKVL KNSDSNTTSA NKVGVRNHKC  300
EIKANRKKMK VDWTPELHKK FVKAVEQLGI DHAIPSRILD LMKVEGLTRH NVASHLQKYR  360
MHKRHILPKQ EDRKWLNQRD PMQRSYCLQR PIMPSPPYYP NHTLPIAPLY SMWGQSRNQT  420
ASMQVWGHSG YPLWQPTESW HWKSFPGMHS DTWGCPVLPP PQPPNFSFSH NIHVLSNANA  480
ADYMFGMPSS FDHYPAEEVV DKVVKEVISK PWLPLPIGLK PPSTDSVLAE ISRQGSSTIP  540
PSSNGSIPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-16313362655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012573646.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-36AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508999.10.0two-component response regulator-like APRR2
RefseqXP_004509000.10.0two-component response regulator-like APRR2
RefseqXP_012573646.10.0two-component response regulator-like APRR2
RefseqXP_012573647.10.0two-component response regulator-like APRR2
SwissprotQ6LA431e-138APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1S3EFA70.0A0A1S3EFA7_CICAR; two-component response regulator-like APRR2
STRINGXP_004508999.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-133ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]