PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012573326.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 400aa    MW: 44198.9 Da    PI: 6.7472
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012573326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.5e-31210267158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     ldDgy+WrKYGqK+vk+s++prsYYrCt+agC vkk++ersa +p++v + Yeg+H+h
  XP_012573326.1 210 LDDGYRWRKYGQKPVKNSPYPRSYYRCTTAGCGVKKRLERSAMEPSFVLTSYEGQHTH 267
                     59*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-31195268IPR003657WRKY domain
SuperFamilySSF1182901.44E-26203269IPR003657WRKY domain
PROSITE profilePS5081130.767205270IPR003657WRKY domain
SMARTSM007741.2E-34210269IPR003657WRKY domain
PfamPF031062.9E-24211267IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGNSSTLTDD EIQKKQNKGN CIINFPFSPA LPSCSIFDII PPQSDDHQKS SSSSFAGYID  60
LLSTNDFTVT SSSTLLDWFP NTVFDADDTS PPPAQINQLP LPSPAVSDVF NTNPATPISV  120
SSSISSSSNE VCVANKPIVP VAGNEHELEL LEEEAKDKDE DRAITHVENQ NQDRTIQTKK  180
LVKGRKKKKK SRKERATRVS FKTKSDVDHL DDGYRWRKYG QKPVKNSPYP RSYYRCTTAG  240
CGVKKRLERS AMEPSFVLTS YEGQHTHFSP ILTRAAELGF VTNASSFHDK NYQHRNTLAT  300
QSQPQHFQHF HHQPDSSSSL FNNSYNIAPP FNVVNSAHNF INQENCAGSS SHSSCLRINL  360
RDLVSDDGLL QDMIAPKEIA GAGAADGEGR IDGDVTFMLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-27202270977Probable WRKY transcription factor 4
2lex_A4e-27202270977Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178189KKLVKGRKKKKK
2184192RKKKKKSRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012573326.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1351002e-35AC135100.12 Medicago truncatula chromosome 8 clone mth2-17j9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012573326.10.0WRKY transcription factor 71-like
TrEMBLA0A1S3EEE60.0A0A1S3EEE6_CICAR; WRKY transcription factor 71-like
STRINGXP_004508134.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2119334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-36WRKY DNA-binding protein 23