PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012572824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | YABBY | ||||||||
Protein Properties | Length: 143aa MW: 16211.4 Da PI: 9.303 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 142 | 6.6e-44 | 1 | 121 | 34 | 168 |
YABBY 34 vvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkvee...enlksnvekeesastsvsseklsenedeevprvppvirPPekrqrv 125 +vtvrCGhC++llsvn+ + l++ + l ++ ee +++ s + ++ ast +++ ++e pr+pp irP ekr rv XP_012572824.1 1 MVTVRCGHCANLLSVNMVAS--LQPFSPP--------LPQQIVLEEpsnKEMGSSSKCNKIASTFEPV------VEHEQPRIPP-IRPIEKRHRV 78 69************776554..4444444........3333333330003333333333334444443......4577789888.9********* PP YABBY 126 PsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 PsaynrfikeeiqrikasnPdishreafs aaknWahfP+ih+ XP_012572824.1 79 PSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHH 121 *****************************************84 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.0E-48 | 1 | 121 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.1E-7 | 68 | 117 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.2E-5 | 77 | 117 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MVTVRCGHCA NLLSVNMVAS LQPFSPPLPQ QIVLEEPSNK EMGSSSKCNK IASTFEPVVE 60 HEQPRIPPIR PIEKRHRVPS AYNRFIKEEI QRIKASNPDI SHREAFSSAA KNWAHFPHIH 120 HFGKQQAKLD HGEATHEKSN GFY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012572824.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090571 | 7e-70 | BT090571.1 Soybean clone JCVI-FLGm-4H4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012572822.1 | 1e-103 | putative axial regulator YABBY 2 | ||||
Swissprot | Q9XFB0 | 8e-47 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A1S3EAG3 | 1e-102 | A0A1S3EAG3_CICAR; putative axial regulator YABBY 2 | ||||
STRING | GLYMA12G10210.3 | 3e-68 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-37 | YABBY family protein |
Publications ? help Back to Top | |||
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