PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572740.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 185aa    MW: 21391.1 Da    PI: 4.4267
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572740.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-16243548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     T++E+ l +d++ ++G++ W++Iar+++ gRt++++k++w++++
   XP_012572740.1  2 TPQEQHLVLDLHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43
                     9*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2E-9145IPR001005SANT/Myb domain
PROSITE profilePS5129423.778147IPR017930Myb domain
CDDcd001671.47E-10143No hitNo description
PfamPF002494.3E-14242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-19244IPR009057Homeodomain-like
SuperFamilySSF466894.06E-12249IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MTPQEQHLVL DLHSKWGNRW SRIARKLPGR TDNEIKNYWR THMRKKRAQE KKNETPSISS  60
SPESSSCQSS HSSNNNNHGV DSHDGSKDGG EESFYENQVQ EDIEQGYSMD DIWKDIAMSE  120
NDINNLDKPV YDGHSSEPLM PSTSWEDYSS DPLWVMDDEE NNFLFPIGDQ YFSFYDQQGS  180
TFLIG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1347673e-63BT134767.1 Medicago truncatula clone JCVI-FLMt-16D24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572740.11e-136transcription factor MYB48-like
TrEMBLA0A1S3EA871e-135A0A1S3EA87_CICAR; transcription factor MYB48-like
STRINGXP_004505889.11e-134(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.22e-37myb domain protein 48