PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572681.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 561aa    MW: 63475.9 Da    PI: 8.1767
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572681.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.55.5e-49171431128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     + pGfrF Ptdeel+++yL+kk++g++ ++ +vi+ev+++k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+ gyWkatgk+++v+s
  XP_012572681.1  17 MFPGFRFCPTDEELISYYLRKKLDGHEESV-QVISEVELCKYEPWDLPaKSFIQSDNEWFFFSSRGRKYPNGSQSKRATDCGYWKATGKERNVKS 110
                     579************************988.99***************667777899************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++++g+k+tLvf+ grapkge+t+W+mhey +
  XP_012572681.1 111 -GSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCI 143
                     .99*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-545158IPR003441NAC domain
PROSITE profilePS5100553.12117159IPR003441NAC domain
PfamPF023654.2E-2519142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MEMVSKEAQM SIAASSMFPG FRFCPTDEEL ISYYLRKKLD GHEESVQVIS EVELCKYEPW  60
DLPAKSFIQS DNEWFFFSSR GRKYPNGSQS KRATDCGYWK ATGKERNVKS GSNVIGTKRT  120
LVFHLGRAPK GERTEWIMHE YCISDRSPDS LVVCRLKKNT EFRQNDASNR ASSSHMNAVN  180
SHESDCAASE GGIDQRGVCE QDKEVDGSSK RGSSSYGSPS MEQIDSVSES NQRPANDTTL  240
TESSGHLKMD EEDCYAEILK NDIIKLDESS MSQGAQTRPP DPANSQPCQG TAQRRIRLRV  300
EKSTHSQPGV RFSRTMHQSK SSSFARMTNH LMIFAFFVIA LMVLFFWSLL GGHKQMKYCV  360
KILGVNCDYF GLLSTSSLSP PNTRKNPTDS PNFRNQRVRW PRVTLSISIS EFPKSLSHFP  420
LTSPSEERGG TQTPHRSIMN LASFLLHTNS LVVMSRPMLL VFLLIILIIT SQFEWKQQLV  480
ADVELNPAVS QKQHHISTAE ETVKEKIILV QEKNIRRLNE LVRHLQEQLQ QCKGSNGTIN  540
STVGPLTERI LELERQQILE D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-431615816164NO APICAL MERISTEM PROTEIN
1ut4_B8e-431615816164NO APICAL MERISTEM PROTEIN
1ut7_A8e-431615816164NO APICAL MERISTEM PROTEIN
1ut7_B8e-431615816164NO APICAL MERISTEM PROTEIN
4dul_A8e-431615816164NAC domain-containing protein 19
4dul_B8e-431615816164NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572681.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0924731e-107BT092473.1 Soybean clone JCVI-FLGm-11C19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572681.10.0NAC domain-containing protein 40
TrEMBLA0A1S3ECK50.0A0A1S3ECK5_CICAR; NAC domain-containing protein 40
STRINGAES671080.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.13e-97NTM1-like 8