PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572245.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 300aa    MW: 34526.1 Da    PI: 4.4482
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572245.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.7e-1953106356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ +q+++Le+ Fe ++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  XP_012572245.1  53 KKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 106
                     566899***********************************************9 PP
2HD-ZIP_I/II129.11.8e-4152144193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls +qvk+LE++Fe e+kLep+rKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy  Lk++ydalk + ++L++++e+L +e+ke
  XP_012572245.1  52 EKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKANYDALKLNYDNLQRDNETLLKEVKE 144
                     69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.52E-1939110IPR009057Homeodomain-like
PROSITE profilePS5007117.15148108IPR001356Homeobox domain
SMARTSM003895.2E-1851112IPR001356Homeobox domain
PfamPF000464.2E-1653106IPR001356Homeobox domain
CDDcd000861.12E-1553109No hitNo description
Gene3DG3DSA:1.10.10.607.1E-2055114IPR009057Homeodomain-like
PRINTSPR000318.2E-67988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000318.2E-688104IPR000047Helix-turn-helix motif
PfamPF021833.9E-17108150IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGEEKGKEQV LRKKKEEQIS PRNNHVYGRE FQSMLEGLDE EGCVEEPLHH SEKKRRLSVD  60
QVKALEKNFE VENKLEPDRK VKLAQELGLQ PRQVAVWFQN RRARWKTKQL ERDYGLLKAN  120
YDALKLNYDN LQRDNETLLK EVKELKSRMQ IEEENTSTES DVSVKEELIT LQDSTTTPTC  180
DETAIPESDS KDLNYECFKN SDGVASLFPA DFKDGSSDSD SSAILNEDNN NSPNAAISSS  240
GVLQNHNFLM SSSQSSMSCF QFQKYVKMEE QNFLGGDETC DFFSDEQPPT LQWYCSDDWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0154985e-94KP015498.1 Vicia sativa subsp. sativa SSR marker NAC-VSspS-11 mRNA sequence.
GenBankKP0156225e-94KP015622.1 Vicia sativa subsp. sativa SSR marker NAC-VSspS-174 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572245.10.0homeobox-leucine zipper protein ATHB-6-like isoform X2
SwissprotQ940J15e-76ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A1S3E8V00.0A0A1S3E8V0_CICAR; homeobox-leucine zipper protein ATHB-6-like isoform X2
STRINGXP_004504111.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.12e-72homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]