PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572172.1
Common NameWRKY1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 364aa    MW: 41857.4 Da    PI: 5.8202
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.48.3e-30136196259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp++++itY+g+H+++
  XP_012572172.1 136 EDGYNWRKYGQKDILGAKYPRSYYRCTFRntqNCWATKQVQRSDEDPNMFDITYRGRHTCS 196
                     8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.205130193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-28132197IPR003657WRKY domain
SuperFamilySSF1182905.23E-26134197IPR003657WRKY domain
SMARTSM007741.1E-41135197IPR003657WRKY domain
PfamPF031068.0E-27136195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MQYKMENECS WEYNTLINEL IQGMDVAKRL KEELRTPYSL NTRDSQVKII LSSYEKALQI  60
LKCNEPTSKT QTMSRAKTLL PESPVSANGS LLSEDIDGAI QDHQEVKHNS KKRKVTPKWM  120
DQIRVSCESG LEGPHEDGYN WRKYGQKDIL GAKYPRSYYR CTFRNTQNCW ATKQVQRSDE  180
DPNMFDITYR GRHTCSQGNN VTEPRKSQDK QEKPQSQNND IHHAQPSQEN FTKFSNTLTV  240
KTDNLGNEEM TCPFTFPSTS FGYTTQENHS WVPPALENDS FLSSLFQSHL LSPATPESNY  300
FSSPTFHMNE FDRVYNKPCS ESDITEIIST NTSVTNSPIP DFHFSLDPVE IDPNFPFNNL  360
GFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-191371931874Disease resistance protein RRS1
5w3x_D7e-191371931874Disease resistance protein RRS1
Search in ModeBase
Function -- GeneRIF ? help Back to Top
  1. Chickpea CaWRKY50 is a W-box binding transcription activator whose over-expression in tobacco leads to early flowering and senescence.
    [PMID: 27060167]
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572172.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0494880.0EU049488.1 Cicer arietinum WRKY family transcription factor (WRKY1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572172.10.0probable WRKY transcription factor 41 isoform X1
TrEMBLA0A1S3E8M90.0A0A1S3E8M9_CICAR; probable WRKY transcription factor 41 isoform X1
STRINGGLYMA05G36970.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.15e-68WRKY family protein
Publications ? help Back to Top
  1. Kumar K, et al.
    WRKY domain-encoding genes of a crop legume chickpea (Cicer arietinum): comparative analysis with Medicago truncatula WRKY family and characterization of group-III gene(s).
    DNA Res., 2016. 23(3): p. 225-39
    [PMID:27060167]