PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571948.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 601aa    MW: 67428.6 Da    PI: 5.1545
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571948.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.16e-52231491127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrF+Ptdeel+++yL++k++g+  e+  vi+e+d++k+ePwd+p  + +++++ ew+fF+++d+ky++g+r nrat++gyWkatgkd++++
  XP_012571948.1  23 LPLGFRFRPTDEELIDYYLRQKINGNGDEV-WVIREIDVCKWEPWDMPdlSVIRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRKIK 116
                     699************************999.89**************96447777888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyr 127
                     s ++ l+g+kktLvfy+grapkg++t+Wvmheyr
  XP_012571948.1 117 S-GTILIGMKKTLVFYSGRAPKGKRTNWVMHEYR 149
                     *.99*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-6115173IPR003441NAC domain
PROSITE profilePS5100555.62423173IPR003441NAC domain
PfamPF023656.9E-2824149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MGSIDCGPSL GDDGMAVLSL NSLPLGFRFR PTDEELIDYY LRQKINGNGD EVWVIREIDV  60
CKWEPWDMPD LSVIRNKDPE WFFFCPQDRK YPNGHRLNRA TTHGYWKATG KDRKIKSGTI  120
LIGMKKTLVF YSGRAPKGKR TNWVMHEYRP TLKELDGTNP GQNAYVLCRL FKKNDESLEV  180
SNCGEVEQTT SAPMAANYSP EEIQSDAAPI AVSTSQVTED DKHQNVIPEI SEETISNVIA  240
SVDCHSDGYD AHDIQNKLAE LAAQEDQMNF DIYYNPKEGL LDDRLFSPAL VHMPQEFHYE  300
ANNESDGGCG LQYGTNEINI SDFLNSDLNW DQLPYVESGC HQQIFSLFNV KENGSGSDSD  360
VEVANMTCMP TTYPEEAIDR RIPCVTAPES RSTFDCSGDD DRKSKVVLLQ NNFQMAYPSD  420
GNIGEVYNVI NGYEQPRNYN TVISGENGIV RRARPAQDEQ WKTFSMQGTA QRRLRLKKIE  480
DCSNVTVKDG SCTQEQHNSK PIIPVKKEAA ESRAADESAT CTHASKQQKV SLKSIYNIKI  540
SRRVTSAGSI LGLRDFLLLA KAPFRSKASP KCTLWSSVFV VSASVLVSLA VFTNIWGYIK  600
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-442217614171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571948.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1194154e-99AC119415.13 Medicago truncatula clone mth2-27n2, complete sequence.
GenBankAC1267894e-99AC126789.20 Medicago truncatula clone mth2-36n23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502779.10.0uncharacterized protein NAC41
TrEMBLA0A1S2YCD90.0A0A1S2YCD9_CICAR; uncharacterized protein NAC41
STRINGXP_004502779.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.25e-90NAC transcription factor-like 9