PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571925.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 251aa    MW: 28143.3 Da    PI: 9.5595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571925.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-2074124256
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+W+AeIrd +     + +r++lg+f tae Aa+a+++a+++++g+
  XP_012571925.1  74 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFETAEAAARAYDEAALRFRGN 124
                     8********.**********66.....56*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-3373132IPR001471AP2/ERF domain
SMARTSM003803.3E-3674137IPR001471AP2/ERF domain
CDDcd000184.76E-2274133No hitNo description
PfamPF008474.5E-1474123IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2374132IPR016177DNA-binding domain
PROSITE profilePS5103225.6274131IPR001471AP2/ERF domain
PRINTSPR003676.5E-127586IPR001471AP2/ERF domain
PRINTSPR003676.5E-1297113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MCMLKVANPR DKVVVKTEFN DPTLSTEMGF LFPDRESSSN RTRTIAIATR EMGNAVYEYR  60
RTESIVREGE EKRKYRGVRQ RPWGKWAAEI RDPFKAARVW LGTFETAEAA ARAYDEAALR  120
FRGNKAKLNF PENVTLRQLP PTTTQWNISN SPTSLVSITT STDPIVHTQP LPTSQLSTNF  180
YQHFHIHAGN VYDDDDDDKK VVMTSTMASH LQPSSSSSAS SSIQANSSLS SFYSTHLPPW  240
SASSHSSSSS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2473134163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-2473134466ATERF1
3gcc_A9e-2473134466ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571925.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0196051e-109CU019605.7 M.truncatula DNA sequence from clone MTH2-6C22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503061.11e-123ethylene-responsive transcription factor ERF110
TrEMBLA0A1S2YD301e-157A0A1S2YD30_CICAR; ethylene-responsive transcription factor ERF110
STRINGXP_004503061.11e-122(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-27ethylene response factor 110