PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571748.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 1269aa    MW: 143233 Da    PI: 8.4039
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.0001311531178123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                      y+C    C++sF +k +L++H r+ +
  XP_012571748.1 1153 YQCDieGCTMSFESKQELVHHKRNiC 1178
                      99********************9877 PP
2zf-C2H213.10.0002811781200323
                      ET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                      Cp   Cgk F ++ +L++H r+H
  XP_012571748.1 1178 CPvkGCGKKFFSHKYLVQHRRVH 1200
                      9999*****************99 PP
3zf-C2H213.80.0001812361262123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      y+C   dCg++F+  s++ rH r+  H
  XP_012571748.1 1236 YVCAepDCGQTFRFVSDFSRHKRKtgH 1262
                      899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5118413.954160IPR003347JmjC domain
PfamPF023732.8E-81243IPR003347JmjC domain
SuperFamilySSF511971.07E-51374No hitNo description
Gene3DG3DSA:3.30.160.602.9E-411441175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.06E-511491205No hitNo description
SMARTSM003555.911531175IPR015880Zinc finger, C2H2-like
SMARTSM003550.004511761200IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.50811761205IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.3E-611771204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028011781200IPR007087Zinc finger, C2H2
SuperFamilySSF576674.86E-911921234No hitNo description
Gene3DG3DSA:3.30.160.602.2E-812051230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001612061230IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.82412061235IPR007087Zinc finger, C2H2
PROSITE patternPS00028012081230IPR007087Zinc finger, C2H2
SuperFamilySSF576675.24E-812241258No hitNo description
Gene3DG3DSA:3.30.160.606.7E-912311258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.13612361267IPR007087Zinc finger, C2H2
SMARTSM003551.112361262IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012381262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1269 aa     Download sequence    Send to blast
MGKPSCMLHA WLVQNAGEFV VTFPRAYHTG FSHGFNCGEA ANIATPEWLR VAKDAAIRRA  60
SINYPPMVSH FQLLYDLALA LCSRVPGGIS VKPRSSRLKD KKKGEGEAVI KELFVQDVLQ  120
NNDLLHVLGK EASVVLLPRS SVDIPICSKL RVGSQRVKVN PGFSINVCNS EGMNSSKGFV  180
SDDLVFNRNR GIAQEKNLCS VKDKFTLLCD GKGISSSEAN GDTSPSSSKQ LQRDSESETS  240
QEDGLPDQRL FSCVTCGLLS FSCVAIVQPR EPAARYFTSS DCSIFSDWAV GSGVPVAREE  300
ANIPEPSMYT GWTKKNAKEK SLNTEGGNGN TALALLASAY GNSSDSEEDA VDNHELNAIK  360
STSERLPSNF RDSHANSMTR LDKDDILSES SSYEANRSEC NFGYQPCDKS FEEQDYKITS  420
GVAFENTRAM PYSATFSSPN TNDAEKNALL APQCDEDSSR MHVFCLEHAA EAEQQLRPIG  480
GSRILLLCHP DYPNIEAEAK LVAEDLGIDY MWKSISYRHG TKEDEERVQS ALDCEEAIPG  540
NGDWAVKLGI NLFYSANLGR SPLYSKQMPY NSVIYYAFGC SSPTSSPIEP KVYQRRDSKQ  600
KKVVAGKWCG KVWMSNQVHP LLAKRDYEDV EDEKSVHGLI IPDEKIERSR RTPKTETAIT  660
KSGSKRKTTS GSGRTRKGRF VEKHVVLDSS AEDKLNPQQR QTLRSKQARC VEKDGTDFLS  720
DCSPPYHRRN PISKQTNCTE SDAVSDDLFD DDDHMRHRRG FNVKKAKFID NDVVSDGTVD  780
YDTDCHQMGE LRCKQIEDTE RDSISEDSLD VGSFQLHRKT SRSKNGNFIN EEVAIFDDQM  840
ENSCQKQKKR IPKSRQGKSL VEKDSVISDD QLELNTQKQR RRNPISTKAK YLAEEDIISD  900
DQTEGNCRKY QRRTVRVRQA KCIIGEYVMS DDQLDSPFQK QKTSISRRKN KGIDREVKNV  960
ISDDQLEDHF QQQQRRIPRS RHTKQAEKEI TDDSADNNAH LPHRTSKRKK AKCKDEDGMS  1020
LDDEMEDDSL QQHKRNLPSK QSKRKTLKQM KQSKSLQMKN QTPQQVKSEA AQQIKQPSHL  1080
RSKQSGNSRE VSLDMDEEEE GGPSTRLRKR VPKAEESEEK PKDKQTKRKR AKDAAAAKVS  1140
AGNAKAKDGE EEYQCDIEGC TMSFESKQEL VHHKRNICPV KGCGKKFFSH KYLVQHRRVH  1200
EDDRPLKCPW KGCKMSFKWA WARTEHIRVH TGARPYVCAE PDCGQTFRFV SDFSRHKRKT  1260
GHLAKKNRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-681153126723137Lysine-specific demethylase REF6
6a58_A1e-681153126723137Lysine-specific demethylase REF6
6a59_A1e-681153126723137Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111071129RKRVPKAEESEEKPKDKQTKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571748.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012571748.10.0lysine-specific demethylase JMJ705-like isoform X2
TrEMBLA0A1S3E8L70.0A0A1S3E8L7_CICAR; lysine-specific demethylase JMJ705-like isoform X2
STRINGXP_004501832.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-178relative of early flowering 6