PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012571563.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27421.8 Da PI: 9.74 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.5 | 3.6e-28 | 11 | 61 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i++k+ rqvtfskRr+g++KKAeELSvLCdaev +i+fsstgkl++y+s XP_012571563.1 11 KKIDDKTARQVTFSKRRKGLFKKAEELSVLCDAEVGLIVFSSTGKLFDYCS 61 68***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-38 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.38 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-26 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 5 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-31 | 5 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-26 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.05E-31 | 18 | 71 | No hit | No description |
PRINTS | PR00404 | 2.5E-26 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-26 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.931 | 88 | 182 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.4E-13 | 93 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MKMKRKKITI KKIDDKTARQ VTFSKRRKGL FKKAEELSVL CDAEVGLIVF SSTGKLFDYC 60 STSMKDTITR YNAQDHGINK LNTPSQELQL EASNRIKLDK EIADRTQQLK QMKGDDIEAL 120 NLNELQLLEK TLHIGFNRVI ETKEKRIMSE ISDLQKMETV LKEENKLLKH KVRNKVEVRQ 180 MISMMSKTRC PSLIDSKIGI QEERVSLDSI SCASDPLFED DYSDTSLKLG LPFSNRRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-20 | 3 | 71 | 1 | 69 | MEF2C |
5f28_B | 6e-20 | 3 | 71 | 1 | 69 | MEF2C |
5f28_C | 6e-20 | 3 | 71 | 1 | 69 | MEF2C |
5f28_D | 6e-20 | 3 | 71 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012571563.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012571562.1 | 1e-173 | MADS-box protein SVP-like isoform X1 | ||||
Refseq | XP_012571563.1 | 1e-173 | MADS-box protein SVP-like isoform X2 | ||||
Refseq | XP_027190122.1 | 1e-173 | MADS-box protein SVP-like isoform X2 | ||||
Swissprot | Q9FVC1 | 3e-70 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A1S3E6X6 | 1e-172 | A0A1S3E6X6_CICAR; MADS-box protein SVP-like isoform X1 | ||||
TrEMBL | A0A1S3E829 | 1e-172 | A0A1S3E829_CICAR; MADS-box protein SVP-like isoform X2 | ||||
STRING | XP_004501636.1 | 1e-146 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-59 | MIKC_MADS family protein |