PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_012570835.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 917aa MW: 102507 Da PI: 5.6879 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.4 | 3.1e-24 | 148 | 249 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae+ +++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++Lk+gD+v+F ++++ XP_012570835.1 148 FCKTLTASDTSTHGGFSVPRRAAEKLfppldyTIQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFI--RDEK 239 99*********************999*****9555555.49************************************************..4577 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+v+v+r+ XP_012570835.1 240 SQLRVGVRRA 249 778****997 PP | |||||||
2 | Auxin_resp | 114.6 | 8.7e-38 | 274 | 357 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++s+Fv++++k++k+++ +++svGmRf m+fete+s +rr++Gt+vg+sd+dp+rWp+SkWr+++ XP_012570835.1 274 AAHAAANRSPFTIFYNPRACPSDFVIPLAKYRKSVYgTQLSVGMRFGMMFETEESGKRRFMGTIVGISDVDPLRWPGSKWRNIQ 357 79**********************************9********************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.22E-46 | 138 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-41 | 140 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.89E-23 | 147 | 248 | No hit | No description |
Pfam | PF02362 | 5.4E-22 | 148 | 249 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-25 | 148 | 250 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.098 | 148 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-32 | 274 | 357 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.0E-11 | 801 | 898 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.818 | 811 | 895 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.51E-8 | 812 | 890 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 917 aa Download sequence Send to blast |
MVSLEEKVKS VGVGVGVGGG GLVAEMKLLK EMQEHCGVRK TLNSELWHAC AGPLVSLPQV 60 GGLVYYFPQG HSEQVAASTR RTATSQIPNY PNLPSQLLCQ VQNVTLHADK ETDEIYAQMT 120 LQPLNSEKEV FPISEFGLKQ SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYT 180 IQPPTQELVV RDLHDNTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLKAGD SVLFIRDEKS 240 QLRVGVRRAN RQQTTLPSSV LSADSMHIGV LAAAAHAAAN RSPFTIFYNP RACPSDFVIP 300 LAKYRKSVYG TQLSVGMRFG MMFETEESGK RRFMGTIVGI SDVDPLRWPG SKWRNIQVEW 360 DEPGCGDKQN RVSVWEIETP ESLFIFPSLT SSLKRPLQTG FLENEWGNLL RRPFIKVPES 420 QTMDLSNSMP NLYQEQMMKM LYKPQVINNN GAFLPTMQQE YAPIRLPLQE MKSTQLIENP 480 KFHLANTESI PIKSQHSQSI PDQTNTFNMH SLLKSDQPEK LHHPAKMDNH LPSGTVTDKP 540 KLESEVLPDN MFDLPSLEGC NVDKVAAPNL VNSQSLTNQF PYHNQNQNPL LNQSSSAWPM 600 QQPQLESSIS HPQMVDMVQP DSSIVNSMLP QLDIDEWMMY PQVANPSMPS MNQDVWDHYV 660 KNFKYLSQPD QLTTSSIIQQ EVYGFNDISS SNNLRDLSSE SNNQSEICVN VDGSNSVSTA 720 IVDPSTSSTI FDDFCTMKNK EFQHPQDCMV GNLSSSQDGQ SQITSASLAE SHAFSLRDNS 780 GGTSSSHIDF DESSFLQNNN NSWKQVAAPI RTYTKVQKAG SVGRSIDVTT FKNYEELICA 840 IECMFGLDGL LNDTKGSGWK LVYVDYESDV LLVGDDPWEE FVGCVRCIRI LSPSEVQQMS 900 EEGMKLLNSG ALQGINV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 22 | 382 | 33 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_012570835.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012570835.1 | 0.0 | auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A1S3E4Y9 | 0.0 | A0A1S3E4Y9_CICAR; Auxin response factor | ||||
STRING | XP_004499235.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8991 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |