PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012570380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Dof | ||||||||
Protein Properties | Length: 286aa MW: 32293.4 Da PI: 4.8357 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116.4 | 1.1e-36 | 13 | 67 | 6 | 60 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ XP_012570380.1 13 PNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 67 58***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-21 | 10 | 58 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.677 | 13 | 67 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-31 | 13 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 15 | 51 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MESTSWKSNE ISPNCPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG 60 GCRKNRRGNN NNKILRQSFD SLTFKNSPNC DTSSDNNNNI SIGHCYDPMM RNITNVSSSS 120 SSPNIDLALV YANFLNQKPN CENSNQIQTT SFDSPSLENS MLSPSKIVTH FSESNNNHEM 180 YCSEFNSMQS FQKDDRIDHQ QQCSNIHDDD GGVNFELPPL PGEEESSAHD DVLWSNSDEI 240 MMNLPFQVTQ QPTPLLGPEI DHDADLLNIG NWCPFDFPND ASFSRP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012570380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012570380.2 | 0.0 | dof zinc finger protein DOF3.5 | ||||
TrEMBL | A0A1S3E3P5 | 0.0 | A0A1S3E3P5_CICAR; dof zinc finger protein DOF3.5 | ||||
STRING | XP_004497698.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1817 | 33 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 8e-34 | Dof family protein |