PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012569658.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 1405aa MW: 161910 Da PI: 6.2671

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012569658.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.5	1.4e-20	92	175	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + + r+etrtgC a++++++ ++++w++ ++ leHnH l XP_012569658.1 92 NYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVS-----NLRKETRTGCPAMIRMRLVESQRWRIREVTLEHNHIL 175 5899************************************99888.....99*******************************87 PP
2	FAR1	68.1	2.2e-21	795	879	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YA+e+GF +r+++s +++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++ eHnH++ XP_012569658.1 795 NYYNSYAREIGFAIRVKSSWAKRNSKEKRGAVLCCNCEGFKTVKEVN-----SHRKETRTGCLAMVRLRLVESSRWRVDEVKIEHNHSFD 879 69**************************************99888.....8999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-17	92	175	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-29	294	387	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.691	581	617	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-6	592	619	IPR006564	Zinc finger, PMZ-type
Pfam	PF03101	9.7E-19	795	879	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.1E-31	1000	1091	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.606	1287	1323	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0019	1298	1325	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1405 aa Download sequence Send to blast
MVMSELDGEE LVTVDVESQP RQEEAEDEHH LTMDDTSMCC EQLQDGECIE IMKDEDGALV 60 GLDCQNDLSE GRKDFVAPAV GMEFESYEDA YNYYICYAKE VGFRVRVKNS WFKRNSREKY 120 GAVLCCSSQG FKRIKDVSNL RKETRTGCPA MIRMRLVESQ RWRIREVTLE HNHILGAKTH 180 KSAKKMGSGT KMKLLPSSDA EVQTVKLYRA LVIDAGGNGV SNSNARDDKI FSEYFNKLSL 240 RKGDTQAIYN FLCRMQLTNP NFFYLMDLND EGQLRNAFWA DGRSRAACGY FSDVIYFDNA 300 YLSNKYEIPL VAFVGINHHG QSVLLGCGLL AGETTKSYTW LFRTWATCMS VCSPQTIITD 360 RCKALQNAIA EVFPRSHHCF GLSLIMKKVP EKLGGLRNYD AIKKALIKAV YETLKVIEFE 420 AAWGFLIQRF GVSDHEWLHS LYEDRVHWAP VYLKDKFFAG MSATHHGESI SPFFDKYVHK 480 QTSLKEFLDK YELALHKKLK EESSADIESR SSNPLLKTKC SFELQLSRMY TKEIFRKFQF 540 EVEEMFSCFG TTQLHVDGPI IIFLVKERIM IEGNKREIKD FEVLYSRTAG EVRCICCCFN 600 FYGYLCRHAL CVLNFNGVEE VPPKYILSRW KKDYKRLYIP DHSSGSSDDT DSIQWSNKLF 660 RSALQAVEEG IISLDHYNVA LQAFEESLNK VHDVEQRQES SDRTMTDDKD LLLSPNLDIT 720 IDDASPNSEQ LLEVVDEGNE LENDCSQLFE IDGSELENGR DETIVVGSHS GESQGKDCAP 780 PVVGMEFETY DDAYNYYNSY AREIGFAIRV KSSWAKRNSK EKRGAVLCCN CEGFKTVKEV 840 NSHRKETRTG CLAMVRLRLV ESSRWRVDEV KIEHNHSFDP ERAQNSKSHK RIDSGAKRKI 900 EPTLDVEVRT IKLYRMPNAD ASSYGSLSSN EGGTSNNNNF SRRLKLKKGD AELISKYFCH 960 RQLASPNFFY VMDLNDDGQM KNIFWIDSRS RAAYSYFGDV VAFDTTYLSN NYEIPLVAFV 1020 GVNHHGQSVL LGCGLLADET FETYIWLFRA WLTCMSGRPP QTIVTNQCKT MQNAIAEVFP 1080 RAHHRICLSQ VIQSILGCLV QFQVYETFQM ALTKVIYDPK TIDEFERDWD ALTQHFGIIN 1140 HEKLQNLHEE REHWAPVYSK DTFLAGISDY EKGESVIPFF KGHVHQQTSL KEFFEIYELV 1200 QQKKQKTEAL NDLESQNSNP SLKTRCYYEL QLSKLYTNAI FSKFQDEVVM MSSCFCISQI 1260 QTNESLVTYM VKEHQGEEEP VRDDRHFEVI YDKAVTEVRC ICSCVNFKGY LCRHALYILN 1320 YNGVEEIPCQ YILSRWRKDF KRLYVPHLSS DNIDVTNPVQ CFDHLYKRAM QVVEEGMVSQ 1380 NHYMVSWQAF KESLNKIRLV ADKIE

Sequence ? help Back to Top

Protein Sequence Length: 1405 aa Download sequence Send to blast

MVMSELDGEE LVTVDVESQP RQEEAEDEHH LTMDDTSMCC EQLQDGECIE IMKDEDGALV  60
GLDCQNDLSE GRKDFVAPAV GMEFESYEDA YNYYICYAKE VGFRVRVKNS WFKRNSREKY  120
GAVLCCSSQG FKRIKDVSNL RKETRTGCPA MIRMRLVESQ RWRIREVTLE HNHILGAKTH  180
KSAKKMGSGT KMKLLPSSDA EVQTVKLYRA LVIDAGGNGV SNSNARDDKI FSEYFNKLSL  240
RKGDTQAIYN FLCRMQLTNP NFFYLMDLND EGQLRNAFWA DGRSRAACGY FSDVIYFDNA  300
YLSNKYEIPL VAFVGINHHG QSVLLGCGLL AGETTKSYTW LFRTWATCMS VCSPQTIITD  360
RCKALQNAIA EVFPRSHHCF GLSLIMKKVP EKLGGLRNYD AIKKALIKAV YETLKVIEFE  420
AAWGFLIQRF GVSDHEWLHS LYEDRVHWAP VYLKDKFFAG MSATHHGESI SPFFDKYVHK  480
QTSLKEFLDK YELALHKKLK EESSADIESR SSNPLLKTKC SFELQLSRMY TKEIFRKFQF  540
EVEEMFSCFG TTQLHVDGPI IIFLVKERIM IEGNKREIKD FEVLYSRTAG EVRCICCCFN  600
FYGYLCRHAL CVLNFNGVEE VPPKYILSRW KKDYKRLYIP DHSSGSSDDT DSIQWSNKLF  660
RSALQAVEEG IISLDHYNVA LQAFEESLNK VHDVEQRQES SDRTMTDDKD LLLSPNLDIT  720
IDDASPNSEQ LLEVVDEGNE LENDCSQLFE IDGSELENGR DETIVVGSHS GESQGKDCAP  780
PVVGMEFETY DDAYNYYNSY AREIGFAIRV KSSWAKRNSK EKRGAVLCCN CEGFKTVKEV  840
NSHRKETRTG CLAMVRLRLV ESSRWRVDEV KIEHNHSFDP ERAQNSKSHK RIDSGAKRKI  900
EPTLDVEVRT IKLYRMPNAD ASSYGSLSSN EGGTSNNNNF SRRLKLKKGD AELISKYFCH  960
RQLASPNFFY VMDLNDDGQM KNIFWIDSRS RAAYSYFGDV VAFDTTYLSN NYEIPLVAFV  1020
GVNHHGQSVL LGCGLLADET FETYIWLFRA WLTCMSGRPP QTIVTNQCKT MQNAIAEVFP  1080
RAHHRICLSQ VIQSILGCLV QFQVYETFQM ALTKVIYDPK TIDEFERDWD ALTQHFGIIN  1140
HEKLQNLHEE REHWAPVYSK DTFLAGISDY EKGESVIPFF KGHVHQQTSL KEFFEIYELV  1200
QQKKQKTEAL NDLESQNSNP SLKTRCYYEL QLSKLYTNAI FSKFQDEVVM MSSCFCISQI  1260
QTNESLVTYM VKEHQGEEEP VRDDRHFEVI YDKAVTEVRC ICSCVNFKGY LCRHALYILN  1320
YNGVEEIPCQ YILSRWRKDF KRLYVPHLSS DNIDVTNPVQ CFDHLYKRAM QVVEEGMVSQ  1380
NHYMVSWQAF KESLNKIRLV ADKIE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012569658.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC135102	0.0	AC135102.16 Medicago truncatula clone mth2-8m3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027192103.1	0.0	uncharacterized protein LOC101503771
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A3Q7XUZ4	0.0	A0A3Q7XUZ4_CICAR; uncharacterized protein LOC101503771
STRING	XP_004486559.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]