PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012569592.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

TALE

Protein Properties

Length: 686aa MW: 75434.5 Da PI: 6.9752

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012569592.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.1	3.6e-09	386	423	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + XP_012569592.1 386 FEHflHPYPKDSDKLMLAKQTGLTRSQVSNWFINARVR 423 554459******************************88 PP
2	BELL	124.1	5.5e-40	250	321	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY+qy++q+++v+ssFe+vag+gsa+ Yt+lAl++iS++FrcLkdaia+qi XP_012569592.1 250 ERQEIQMKKAKLINMLDEVEQRYRQYHHQMEVVVSSFEQVAGIGSARTYTALALQTISKQFRCLKDAIAGQI 321 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.3E-61	178	319	IPR006563	POX domain
Pfam	PF07526	6.3E-47	183	318	IPR006563	POX domain
PROSITE profile	PS50071	12.147	364	427	IPR001356	Homeobox domain
CDD	cd00086	8.69E-12	367	428	No hit	No description
SMART	SM00389	2.3E-9	367	431	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-17	368	434	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-28	370	433	IPR009057	Homeodomain-like
Pfam	PF05920	6.2E-18	384	423	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence Send to blast
MATYFHGNNN SDQSGGADGL QTLVLMNPTY IQYSDTTQQP PPPSHSSTGN LVFLNSTTTN 60 NNSYSPHAPP SHTQQFVGIP LTTNSQDINN QHSIHAHHDV PSLHGFLPHM QYNQWNSIDT 120 NAAARETPRA QQGLSLTLSS QPARFVSFRE GGAMPGGGSP SPSPGSGVTN NNNGGSNSGI 180 HSVVVSSKYL RAAHELLEEV VNVNSGIELG KKSVGREKNK VIGESSGGDG SIIGGGEGSG 240 KRSIELSTSE RQEIQMKKAK LINMLDEVEQ RYRQYHHQME VVVSSFEQVA GIGSARTYTA 300 LALQTISKQF RCLKDAIAGQ IRATNKSLGE DDCFGVKIEG SRLKYVDHQL RQQRALQQLG 360 MIQHNAWRPQ RGLPERSVSV LRAWLFEHFL HPYPKDSDKL MLAKQTGLTR SQVSNWFINA 420 RVRLWKPMVE EMYLEEMKEN ELNGSEDKSS KSNEDSSMKI ASPQDKVLTS ETDVKGYNST 480 QEVSISQDTS PIISVSKRQQ TSPLGGNVRN QSGFSFIGSS ELEGIAQGSP KKSRNHELMH 540 SSNSFPLVNM DVKHNEGNNE EISMKFGDER HSRDGYSFMG NQTNFIGGFG QYPIGDIGRF 600 DSEQFTTPRF SSNGVSLTLG LDSIQGTHQT FLPNQNIQLG RSLDISEQNE FGSINTSSPH 660 STGPFESINM QNPKRFAAQL LPDFVS

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence Send to blast

MATYFHGNNN SDQSGGADGL QTLVLMNPTY IQYSDTTQQP PPPSHSSTGN LVFLNSTTTN  60
NNSYSPHAPP SHTQQFVGIP LTTNSQDINN QHSIHAHHDV PSLHGFLPHM QYNQWNSIDT  120
NAAARETPRA QQGLSLTLSS QPARFVSFRE GGAMPGGGSP SPSPGSGVTN NNNGGSNSGI  180
HSVVVSSKYL RAAHELLEEV VNVNSGIELG KKSVGREKNK VIGESSGGDG SIIGGGEGSG  240
KRSIELSTSE RQEIQMKKAK LINMLDEVEQ RYRQYHHQME VVVSSFEQVA GIGSARTYTA  300
LALQTISKQF RCLKDAIAGQ IRATNKSLGE DDCFGVKIEG SRLKYVDHQL RQQRALQQLG  360
MIQHNAWRPQ RGLPERSVSV LRAWLFEHFL HPYPKDSDKL MLAKQTGLTR SQVSNWFINA  420
RVRLWKPMVE EMYLEEMKEN ELNGSEDKSS KSNEDSSMKI ASPQDKVLTS ETDVKGYNST  480
QEVSISQDTS PIISVSKRQQ TSPLGGNVRN QSGFSFIGSS ELEGIAQGSP KKSRNHELMH  540
SSNSFPLVNM DVKHNEGNNE EISMKFGDER HSRDGYSFMG NQTNFIGGFG QYPIGDIGRF  600
DSEQFTTPRF SSNGVSLTLG LDSIQGTHQT FLPNQNIQLG RSLDISEQNE FGSINTSSPH  660
STGPFESINM QNPKRFAAQL LPDFVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	8e-16	373	431	5	63	Homeobox protein Meis2
3k2a_B	8e-16	373	431	5	63	Homeobox protein Meis2
4xrs_A	7e-16	373	430	1	58	Homeobox protein Meis1
4xrs_B	7e-16	373	430	1	58	Homeobox protein Meis1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012569592.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004494251.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_012569592.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-165	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A1S3E1E5	0.0	A0A1S3E1E5_CICAR; BEL1-like homeodomain protein 1
STRING	XP_004494251.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-140	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]