PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012569262.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HRT-like | ||||||||
Protein Properties | Length: 384aa MW: 43346.3 Da PI: 10.1727 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 56.6 | 4.3e-18 | 262 | 291 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCGv+l dGs+Ckr+Pv++R RC eHKGmR XP_012569262.1 262 ICGVMLADGSICKRPPVEKRVRCPEHKGMR 291 8****************************9 PP | |||||||
2 | HRT-like | 61.4 | 1.4e-19 | 345 | 375 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il+dGs+C+rqPvkgRKRC+eHKG+Ri XP_012569262.1 345 ICGIILDDGSTCRRQPVKGRKRCHEHKGKRI 375 8*****************************7 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MVTNRLKREQ CDRTKHDSSF SHWKILIGPS DWEDYSKGKE GSTRYRVHNL PQKLGPGVYE 60 LGVAVSRSGL GREIYKLAAD PRRIIVVYLG KADNVRARLQ CYGRNGAHLG NSYLSDDSSL 120 QMGRSLFQEI FSQGFPIVYR WAPMQNTGEA LSTEAQLLST FDYAWNTIKN GTRRPNDILE 180 MLNNFASGTT TFSDVAKLLL PFTQKKVGIP IKSSKLPLTD DKLDEADNGR YNFLSRVFKF 240 NRSRPRIVQD TTDGATHENA KICGVMLADG SICKRPPVEK RVRCPEHKGM RRNVSTAKAS 300 RAPKAELESI VGNAYRYQNV NHDVEDPPQK VVDSHVEESI TKTIICGIIL DDGSTCRRQP 360 VKGRKRCHEH KGKRIRASIH TNQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012569262.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147961 | 0.0 | AC147961.3 Medicago truncatula chromosome 7 clone mth2-39i23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004493411.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2-like | ||||
TrEMBL | A0A1S3E0H3 | 0.0 | A0A1S3E0H3_CICAR; protein EFFECTOR OF TRANSCRIPTION 2-like | ||||
STRING | XP_004493411.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 7e-92 | effector of transcription2 |