PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012568534.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 404aa MW: 44606.3 Da PI: 4.8325 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.4e-18 | 84 | 134 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv eIr+p + r kr +lg+f ta+eAa a+++a+++++g XP_012568534.1 84 CNYRGVRQRT-WGKWVGEIREP---N-RgKRLWLGTFSTAQEAALAYDEAARAMYG 134 56*****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.23E-33 | 84 | 144 | No hit | No description |
Pfam | PF00847 | 8.9E-13 | 84 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-37 | 85 | 148 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-32 | 85 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 85 | 143 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.181 | 85 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 86 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 108 | 124 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MGAAYEQSGN VFLAPIETSR KRKTRSRGKG TRSVAETIAK WKEYNEHIYA AAGKDDAKQK 60 RKAPAKGSKK GCMKGKGGPQ NSECNYRGVR QRTWGKWVGE IREPNRGKRL WLGTFSTAQE 120 AALAYDEAAR AMYGPSARLN FPHVSDYSSI KESLKESTAA SYSCSSVATT PATSEITTVS 180 SHSDVFAVED VKEIPKPVNM KNDNTVAVYR EVYEASSPIS RMKQEPKDEP ADIIDPGGGE 240 IQDGKSEGNQ TQTLTHDVQI GEGVCNGQMD LSWIDDFDFN GDYLKSFSMD ELFQVDELLG 300 HIDNNPIDES GLVRSLDFGQ MGFPEQSNPQ VGTSSSFFYE LENPDAKLLG SLPHMEHTTS 360 GVDYGLDFLK TEEPGNFNIG VEDTPFLNLD YDMNHDMSHD SRGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-18 | 85 | 142 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 23 | SRKRKT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012568534.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004491005.1 | 0.0 | dehydration-responsive element-binding protein 2C | ||||
Refseq | XP_012568534.1 | 0.0 | dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A1S3DZF5 | 0.0 | A0A1S3DZF5_CICAR; dehydration-responsive element-binding protein 2C | ||||
STRING | XP_004491005.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 9e-43 | ERF family protein |