PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012568478.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 623aa    MW: 70739.4 Da    PI: 10.4786
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012568478.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.2e-16141229197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v +  +l lp +f+eeh  k  +   ++lede+g + +  +i ++++    l++GW++F+  ++L++gD +vF+l++  +f  ++ 
  XP_012568478.1 141 FVKSMVRSHVYSCFWLGLPSRFCEEHLPK--TVYNMVLEDEDGSETDAVYIGNRSG----LSGGWRGFALHHKLDDGDALVFELVEPARF--KIY 227
                     89************************534..3457***************555554....9**********************9875555..665 PP

                     EE CS
              B3  96 vf 97 
                     ++
  XP_012568478.1 228 IV 229
                     55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-18134230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-21135230IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-22139230No hitNo description
SMARTSM010194.1E-21141235IPR003340B3 DNA binding domain
PfamPF023621.5E-14141229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.603141232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MAKGCNNYEE ARKLRLEENK KRFEDLGISK ISKKLTKIKS PAKKSPSRFL KPNSKTNGVV  60
EPRRSSRARN SVSSYREEFS MDLPHRSSYI RKRSRSSSSS WESYIARPLE EIKEATREER  120
IRALEAAEKL QNNLQSSNPS FVKSMVRSHV YSCFWLGLPS RFCEEHLPKT VYNMVLEDED  180
GSETDAVYIG NRSGLSGGWR GFALHHKLDD GDALVFELVE PARFKIYIVR AFPKSDEEEE  240
NDTLVEEENV HKSKATKESK GSGNRQSESK KTKRQKQAIV CETKESESSK ESMPESSINK  300
DSKLKRVNPK RRTKSFQKNV QKKSKLPTTP DSESKEEAKV ETLKLETTIR KTRSSQKKMQ  360
KISEVPTTPD SEPKEEAKIE SLKPKAAIAK TRSSQRKMQK ISEVPTTSDS KPKEEAKIET  420
LKPKAAIAKT RSSQRKRQKI SEVPTTPDNE PKEEAKIESL KPKAAIAKTR SSQRKRQKIS  480
EVPTTPDNEP KEEAKIETPK PNAAIAKTRS SQRKMQKTSE VPTTSKGEAL VETMKPKAAT  540
KLSKKKKKSE EGNACEIGDS GNTKQLLEDN VVKIIEVNPS EKKEVIEDAD IELKKVERDE  600
KASKCDSQKP RKKPTQRFFR KRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1611621KKPTQRFFRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012568478.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1524982e-36AC152498.11 Medicago truncatula chromosome 8 clone mth2-38m20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490734.10.0ankyrin repeat domain-containing protein 12-like
RefseqXP_004490735.10.0ankyrin repeat domain-containing protein 12-like
TrEMBLA0A1S2XMV70.0A0A1S2XMV7_CICAR; ankyrin repeat domain-containing protein 12-like
STRINGXP_004490734.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-46B3 family protein