PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012568391.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26636.4 Da    PI: 9.8615
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012568391.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.3e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev +iifsstgkly+++s
  XP_012568391.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGIIIFSSTGKLYDFAS 59
                    8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.833161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-39160IPR002100Transcription factor, MADS-box
CDDcd002657.56E-43276No hitNo description
SuperFamilySSF554553.01E-31280IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014866.1E-2484157IPR002487Transcription factor, K-box
PROSITE profilePS5129715.186199IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGIIIFSS TGKLYDFAST  60
SMRSVIDRFN KSKEESNQLG NAASEIKFWQ REAAMLRQQL HNLQESHRQI MGEELSGLTV  120
KELRSLENQL EISLRGVRMK KDQLLTNEIQ ELNRKVSPEM EKLRTYSLFK TYFYILQGDI  180
IQQENEELYK KVYGTKHENG INRNSVFTVS LDIEDNLHVP VNLQLSQPQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-20174174MEF2C
5f28_B8e-20174174MEF2C
5f28_C8e-20174174MEF2C
5f28_D8e-20174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012568391.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankMSU919641e-134U91964.1 Medicago sativa MADS-box protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568391.11e-168MADS-box transcription factor 23-like isoform X1
RefseqXP_027187514.11e-168MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP497e-96MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S3DZX21e-167A0A1S3DZX2_CICAR; MADS-box transcription factor 23-like isoform X1
STRINGXP_004490465.11e-141(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-94AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]