PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012568344.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

GeBP

Protein Properties

Length: 534aa MW: 59896 Da PI: 8.4244

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012568344.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	78	1.5e-24	314	405	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +r++s++Dei++LqGl dfk+ktg++ps + a+ + +k+s+s+k + +q+ +K+ +K+Kf+kkv++ +k+p ++++hd+k++el+ k+Wg XP_012568344.1 314 YNRVFSDKDEIAILQGLADFKSKTGTDPSTNYPALLDSLKDSLSIKPTIKQVRQKVYYIKQKFEKKVNN---DKSPILANPHDEKVYELCCKLWG 405 589*************************************************************999...9*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.4E-22	315	405	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
MTIANNIKTT IPPTQSAKEY LKFVEDNFFS VNKSLIGTRM AKPTTMKFDG SQDMQEHTIE 60 MANTSKTKVF RSLVFLSKLD NYGFEFNGGH ESSFDPPLTH GGADVTGKQV IRCRTHRILL 120 NDSTLVPPPS TGISSTTTEL TNNPYVIGEV NRMDLIDLDV VYVDHHGGIV VTSIGHECDA 180 HLFDLQRDLR DNMKCLKREK ELERPVEDYN VFIVTHKKST KEFISDRVKN ADPQPSPQTT 240 PIPKKPSSKT LAPPPTKPAS PSSYETESDS HPQIQQPTPP PSNSKSNPSR PARSKKQTPT 300 AAAAAAAADS SNPYNRVFSD KDEIAILQGL ADFKSKTGTD PSTNYPALLD SLKDSLSIKP 360 TIKQVRQKVY YIKQKFEKKV NNDKSPILAN PHDEKVYELC CKLWGHDNEA SEVKEKPRKK 420 ENAAKKPLKL KEPMQIPEQV LSGTEVRLES GKGESSDELS HVSLNLSEMI RFDKMSSDVN 480 VLKRGMELID ESERAEFERR WKKLRVDEMK LFVKRAELVE YQVGLILEAI QGLS

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

MTIANNIKTT IPPTQSAKEY LKFVEDNFFS VNKSLIGTRM AKPTTMKFDG SQDMQEHTIE  60
MANTSKTKVF RSLVFLSKLD NYGFEFNGGH ESSFDPPLTH GGADVTGKQV IRCRTHRILL  120
NDSTLVPPPS TGISSTTTEL TNNPYVIGEV NRMDLIDLDV VYVDHHGGIV VTSIGHECDA  180
HLFDLQRDLR DNMKCLKREK ELERPVEDYN VFIVTHKKST KEFISDRVKN ADPQPSPQTT  240
PIPKKPSSKT LAPPPTKPAS PSSYETESDS HPQIQQPTPP PSNSKSNPSR PARSKKQTPT  300
AAAAAAAADS SNPYNRVFSD KDEIAILQGL ADFKSKTGTD PSTNYPALLD SLKDSLSIKP  360
TIKQVRQKVY YIKQKFEKKV NNDKSPILAN PHDEKVYELC CKLWGHDNEA SEVKEKPRKK  420
ENAAKKPLKL KEPMQIPEQV LSGTEVRLES GKGESSDELS HVSLNLSEMI RFDKMSSDVN  480
VLKRGMELID ESERAEFERR WKKLRVDEMK LFVKRAELVE YQVGLILEAI QGLS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012568344.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012568344.1	0.0	STOREKEEPER protein-like
TrEMBL	A0A1S3DYV7	0.0	A0A1S3DYV7_CICAR; STOREKEEPER protein-like
STRING	XP_004490268.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18165	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25210.1	1e-11	DNA-binding storekeeper protein-related transcriptional regulator