PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012568307.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

WRKY

Protein Properties

Length: 313aa MW: 35756.9 Da PI: 4.8668

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012568307.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	33.7	7.2e-11	231	257	2	28
--SS-EEEEEEE--TT-SS-EEEEEE- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCt 28 +D ++WrKYGqK++kgs++pr C+ XP_012568307.1 231 EDPWAWRKYGQKPIKGSPYPRWNMSCA 257 899******************888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-10	221	258	IPR003657	WRKY domain
PROSITE profile	PS50811	14.217	225	291	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-9	226	258	IPR003657	WRKY domain
SMART	SM00774	3.9E-5	230	273	IPR003657	WRKY domain
Pfam	PF03106	3.1E-6	231	257	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MDTDDCDLLA IVRSCKLPQL LITPPFLKLP PPPIPLFSLK IPHLFTFTQG NSSTPCVPLK 60 PNDFIELEKL KIIPTPTTIP TPITITSNNS VYDTNQNSTF YNFPTLMEQQ QMQLNLNQYE 120 LDLTEQTKLS YYDEPRFEFP SVESPIFNFE HASNRVNCIT ITTDHFDLAY NHPSLQLQPQ 180 QELNQLPIQE PQTNSMVLAN ANPQPNKQRS RKRKNQPLKM ICEMNAQKLL EDPWAWRKYG 240 QKPIKGSPYP RWNMSCALVD REQVVNSSTF NDMENLECVV LPPGISNVAT PLEATIIKIS 300 PLDLNDADIT LQM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012568307.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012568307.2	1e-179	uncharacterized protein LOC105851598
TrEMBL	A0A1S3DXT8	1e-178	A0A1S3DXT8_CICAR; uncharacterized protein LOC105851598
STRING	XP_004516708.1	1e-135	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	7e-15	WRKY DNA-binding protein 27