PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012567935.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 482aa    MW: 54262 Da    PI: 10.5992
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012567935.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.6e-08841236
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                     grW t+E++ll  av ++G+++Wk +a+++   Rt
   XP_012567935.1  8 GRWGTWEELLLGGAVLRYGTRDWKVVAAELR-SRT 41
                     8*****************************9.998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002493.2E-6842IPR001005SANT/Myb domain
CDDcd001670.00696956No hitNo description
SuperFamilySSF473704.32E-20262374IPR001487Bromodomain
Gene3DG3DSA:1.20.920.107.1E-18264376IPR001487Bromodomain
SMARTSM002972.3E-20270374IPR001487Bromodomain
PfamPF004391.2E-12279359IPR001487Bromodomain
PROSITE profilePS500149.877285355IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MMGTKVMGRW GTWEELLLGG AVLRYGTRDW KVVAAELRSR TVCPYTFTPE VCKAKYEDLQ  60
KRYSGSTRAW FEELKKTRVA ELKRALELSE DSIGSLQSKL EFLKSGKNEK KDDCENGSRS  120
PVSHVPSHKL ERVESSTKET SKDGLSAGSF THEMRTNWSP ECHVPARSVD DIETKPEVSQ  180
SSEQVKVLNV DNLAHIYEGL GVVGASFRKR RGKRKRKDCS KNIKEASVGE SDLLDSTDVI  240
SWCKESSTTS NCGEVAKSCA DVNDRNKNLK KHCTEDMIEI LDSVFETKGA SAFRRRLDGQ  300
KRGRYKKMIR RHMDFDTIRS RISNQTIKST IELFRDLLLL ANNALVFYSK NTREHKTAQL  360
LRDIVTKKMR ESFKDNTISS RKVTQVNESM KLPINNLHVK PRSVRPGSRK ITAKAIDGNN  420
SAFGMTQGAK KPSKADSPPS VESLTVTKKA AFGRPKKVGR VTSGQKTTTT PMKGRKRVRT  480
KS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209217RRGKRKRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012567935.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012567935.10.0uncharacterized protein LOC101507433 isoform X1
TrEMBLA0A1S3DWV30.0A0A1S3DWV3_CICAR; uncharacterized protein LOC101507433 isoform X1
STRINGXP_004485733.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.17e-35DNA-binding bromodomain-containing protein