 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_012567373.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
| Family | MYB_related | ||||||||
| Protein Properties | Length: 255aa MW: 28733.1 Da PI: 7.4992 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 41.9 | 2.3e-13 | 14 | 71 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT.............-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.............tWktIartmgkgRtlkqcksrwqk 46
rg WT+eE e +v++++ + g W+ Ia+ ++ +Rt +++k++w++
XP_012567373.1 14 RGGWTPEENETFVEYINNHRHGswrtlpklagscfLWAVIASQLP-RRTNNEIKNYWNT 71
789*******************************99*********.***********98 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 4.5E-17 | 5 | 79 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 12.062 | 9 | 77 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 9.66E-11 | 9 | 78 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 1.3E-9 | 13 | 75 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 5.2E-11 | 14 | 72 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 4.34E-7 | 17 | 71 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 255 aa Download sequence Send to blast |
MGKTKCCDQH GVKRGGWTPE ENETFVEYIN NHRHGSWRTL PKLAGSCFLW AVIASQLPRR 60 TNNEIKNYWN TQLKKRLPQS GSMMHSVVKP ESPSKYHTAQ WKSVRVEAET RLSMESSLLT 120 SLPTSESKTR SHYSLQLWNS EVGNLFRMIK GNSVVCRSNN VSEASLSSKL ESCSDVTLQV 180 KNIESGTLVN KSQEEQGIGY KPKLEDGTIE SKSSYYELLD SSDSALNIFL DMNDDQIGSS 240 GQNESFLDTL YGKFD |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_012567373.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027186745.1 | 0.0 | transcription factor MYB41-like | ||||
| TrEMBL | A0A3Q7YBP5 | 1e-180 | A0A3Q7YBP5_CICAR; transcription factor MYB41-like | ||||
| STRING | XP_007143400.1 | 2e-80 | (Phaseolus vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G61250.1 | 8e-36 | myb domain protein 17 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|