PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012567350.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 598aa    MW: 65906.4 Da    PI: 6.5828
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012567350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.6e-24117218199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+ltpsd+++ g +++p+ +a+++       ++++ ++  l ++d +g +We+++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  +++
  XP_012567350.1 117 FAKILTPSDANNGGGFSVPRFCADSIfppldfsMEPPFQP--LHITDVHGTTWEFRHIYRGTPRRHLLTTGWSRFVNGKKLVAGDSVVFM--KNT 207
                     89*********************999*****965455455..9999********************************************..779 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++++v+++r+
  XP_012567350.1 208 RGKMFVGIRRA 218
                     99******996 PP
2Auxin_resp92.38.1e-31279361182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                     aa+ a+++++FevvY+P+a++s+Fvv++e v +a+ v +s+GmR+kma+et+dss++++ +G+v+++s  d+  W++S+Wr+L
  XP_012567350.1 279 AAELAAQGMPFEVVYYPKAGWSDFVVRAEVVDDAMGVMWSPGMRIKMAVETDDSSRTTWfQGVVSSLSVPDNGPWRGSPWRML 361
                     68899*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-34112220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-30113223IPR015300DNA-binding pseudobarrel domain
CDDcd100177.87E-21116217No hitNo description
PfamPF023621.2E-22117218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.435117219IPR003340B3 DNA binding domain
SMARTSM010196.0E-19117219IPR003340B3 DNA binding domain
PfamPF065079.1E-28279361IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MNRQVLPPMP TKASNLDPKI WRAIAGAAVQ IPTVNSRVYY FPQGHMDQAS SPPNNLSPLL  60
LSRPFILCTV STVHFLADPN TDEVFAKLFL QPLNDFTAAF PRLPNRDVDD GDRISSFAKI  120
LTPSDANNGG GFSVPRFCAD SIFPPLDFSM EPPFQPLHIT DVHGTTWEFR HIYRGTPRRH  180
LLTTGWSRFV NGKKLVAGDS VVFMKNTRGK MFVGIRRAVR LVQPRTGTDS PRLCLPMCGV  240
RNRVDDEEEK QQKEEEEKCK EGFSRNGKGK LSPKLVSEAA ELAAQGMPFE VVYYPKAGWS  300
DFVVRAEVVD DAMGVMWSPG MRIKMAVETD DSSRTTWFQG VVSSLSVPDN GPWRGSPWRM  360
LHITWDEPEV LQTSKWVSPW QVELLSTTSS LHTAFPSLKR LRGGSGVLID REGDPFSMTA  420
FTHSTMGQLN QALLSYGTFP AGMQGARHDL FSSISSFSNF TGDNSRLCMG NSFGNNTVPG  480
LKSLSTELNV GSSRSDDLSP ESQSSLPSFG TDFLRNHNCN SMKPGSVSFQ LFGAVIQTEQ  540
PVESGSRGTS CTGDDSSKGC NETEGINNSL EDSLTYSKLL DRMDGQCQIA STVEACYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A6e-651938922359Auxin response factor 1
4ldy_B6e-651938922359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012567350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012567350.10.0auxin response factor 17
SwissprotQ84WU61e-170ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A1S3DV830.0A0A1S3DV83_CICAR; Auxin response factor
STRINGXP_004515659.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-168auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]