PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012567341.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 794aa    MW: 88689.7 Da    PI: 6.0457
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012567341.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.64.3e-22643739295
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ +t+ed  ++r+W+++++y  ++ks++y+l+ ++ +FvkangL+egDf+v++  ++ +++
  XP_012567341.1 643 QKVLKQSDVGSLGRIVLPKKEAETHlpELEARDGISITMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVKANGLQEGDFIVIY--SDvKCG 734
                     79*************************999999********7778*********777777777777.********************..555899 PP

                     ..EEE CS
              B3  91 elvvk 95 
                     +++++
  XP_012567341.1 735 KFMIR 739
                     77765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-29637751IPR015300DNA-binding pseudobarrel domain
CDDcd100159.12E-37640741No hitNo description
SuperFamilySSF1019364.05E-24641738IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.378642744IPR003340B3 DNA binding domain
SMARTSM010193.4E-22642742IPR003340B3 DNA binding domain
PfamPF023622.3E-18643739IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MDCGVEFQDL HAKLVNDTEQ VGFGIGTAEE EENLVQVSER EMWLNNTTND QVDHLLGMND  60
DASMFYADFP PLPDFPCMSS SSSSSSSSTP LKTIACSTTT TTTSSSSSAS SSSAASWAIL  120
KSEDGNKMKN HGYDNNMHQN DVSLLDHHHG HANTLSSTAS MEISQQQQQQ QHENNNIGLS  180
TNDCMDDVIM ETFGYMELLE ANEFFDPSIF QNEDNPLVDF TQEQQQLQVQ PQHQGEYHHE  240
HAMVVNESET KQQGIEEDNN VFVCDVVNNE DEIQGEEESG FDGVNDEMSM VFLEWLKSNK  300
DSVSANDLRN VKLKKSTIES AARRLGGGKE GMKQLLKLIL EWVQTSHLQN KRHKQNNTTM  360
LSNVLVPQQQ QFQDPCQNQN TFAPESTNTC FNQTQWLIDQ TPLIVNPPQF SSQPMVGYVG  420
SDPYTNGSVS NNPYNQQHVT NEFQHMLESN NSWGGSQFTI AAASHYNQSF GENNSNNNNN  480
NMLQHGVSFG GYGNQYPYQF FHGPGDRLMR LGPSATKEAR KKRMARQRRF MSHHRNHNNN  540
NNQHLLNNHQ GSDPLGRLGG DNCTNLVAAA GSHGNPPNWM YWQTMAAGGG ASLAPVVPAE  600
PPPPQVPVER STMQAQNCHQ GRNASSDRRQ GWKPEKNLRF LLQKVLKQSD VGSLGRIVLP  660
KKEAETHLPE LEARDGISIT MEDIGTSRVW NMRYRYWPNN KSRMYLLENT GDFVKANGLQ  720
EGDFIVIYSD VKCGKFMIRG VKVRQQQGAK PEAKKAGKSH KNQHGNNATN SAGTAVANNG  780
TQSSPKRKNE KILN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-376387471110B3 domain-containing transcription factor FUS3
6j9b_D1e-376387471110B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012567341.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0801951e-160AB080195.1 Pisum sativum abi3 mRNA for ABA insensitive 3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012567341.10.0B3 domain-containing transcription factor ABI3 isoform X3
TrEMBLA0A1S2Z5U90.0A0A1S2Z5U9_CICAR; B3 domain-containing transcription factor ABI3 isoform X3
STRINGXP_004515628.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-151B3 family protein