PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004516765.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 257aa    MW: 29827.6 Da    PI: 8.0947
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004516765.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-164087148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c+ rw++yl
   XP_004516765.1 40 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRFRWLNYL 87
                     79********************************************97 PP
2Myb_DNA-binding50.16.3e-1693160146
                      TSSS-HHHHHHHHHHHHHTTTT.......................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.......................tWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ ++++++G++                       +W++Ia++++ gRt++++k++w++
   XP_004516765.1  93 RGNITPEEQLLIMKLHAKWGNRgfkiivfhsldtrtgvlfsfkgyRWSKIAKHLP-GRTDNEIKNYWRT 160
                      7999***************************************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-233390IPR009057Homeodomain-like
PROSITE profilePS5129423.673591IPR017930Myb domain
SMARTSM007172.4E-123989IPR001005SANT/Myb domain
PfamPF002498.5E-164087IPR001005SANT/Myb domain
SuperFamilySSF466892.23E-234091IPR009057Homeodomain-like
CDDcd001673.98E-104287No hitNo description
Gene3DG3DSA:1.10.10.604.0E-2291151IPR009057Homeodomain-like
SMARTSM007171.7E-1292164IPR001005SANT/Myb domain
PROSITE profilePS5129411.53492166IPR017930Myb domain
PfamPF002498.5E-1493160IPR001005SANT/Myb domain
CDDcd001674.07E-997160No hitNo description
SuperFamilySSF466892.23E-23135161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-6152198IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MCIHEHMSSF MYFSHSLSLS YKIMDKNKEC NSSQDPDVRK GPWTMEEDLI LINYIANHGE  60
GVWNSLAKSA GLKRTGKSCR FRWLNYLRPD IRRGNITPEE QLLIMKLHAK WGNRGFKIIV  120
FHSLDTRTGV LFSFKGYRWS KIAKHLPGRT DNEIKNYWRT RIQKHIKQAE NSQQQNCDQI  180
NDNNNQIASS SQVSNMAPEP MDISPPCYQG GILEPFSSHD HHHHFPTISD QSSCCTNDNN  240
NYWSMEDFLS MQLLNGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-21361663108B-MYB
1h8a_C7e-213516622128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004516765.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004516765.10.0myb-related protein 305-like isoform X1
SwissprotP813912e-83MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A1S2Z8550.0A0A1S2Z855_CICAR; myb-related protein 305-like isoform X1
STRINGXP_004516765.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.15e-73myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]