PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004516708.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 390aa    MW: 44335.8 Da    PI: 5.605
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004516708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.21.9e-29235294260
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     +D ++WrKYGqK++kgs++prsYYrC+sa +C +kk ve+s+++++++ +tY+geHnhek
  XP_004516708.1 235 EDPWAWRKYGQKPIKGSPYPRSYYRCSSArECGAKKLVEKSHTNENTFLVTYTGEHNHEK 294
                     899************************999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.6E-29225295IPR003657WRKY domain
PROSITE profilePS5081129.654229295IPR003657WRKY domain
SuperFamilySSF1182907.06E-25230295IPR003657WRKY domain
SMARTSM007743.6E-33234294IPR003657WRKY domain
PfamPF031063.6E-24235293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDTDDCDLLA IVRSCKATTI TNHTTVFETP TPTNNTIFPQ NPTPYFEDFT FTQGNSSTPC  60
VPLKPNDFIE LEKLKIIPTP TTIPTPITIT NNNSVYDTNQ NSTFYNFPTL MEQQQMQLNL  120
NQYELDLTEQ TKLSYYDEPR FEFPSVESPI FNFEHASNRV NCITITTDHF DLAYNHPSLQ  180
LQPHQELNQL PIQEPQTNSM VLANANPQPN KQRSRKRKNQ PLKMICEMNA QKLLEDPWAW  240
RKYGQKPIKG SPYPRSYYRC SSARECGAKK LVEKSHTNEN TFLVTYTGEH NHEKPINRIM  300
VSTPSWNKPP ETRLLPAGVV GPSQNIVSPN AMLWFDQPES GNSPIHGGNA QVNNDDNIVL  360
VPNMMAVSET SLMNFNPLNI GNIPFVESNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-172332951677Probable WRKY transcription factor 4
2lex_A2e-172332951677Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004516708.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568307.21e-137uncharacterized protein LOC105851598
TrEMBLA0A1S3DXT81e-136A0A1S3DXT8_CICAR; uncharacterized protein LOC105851598
STRINGXP_004516708.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.18e-24WRKY DNA-binding protein 27