PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004516250.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 528aa    MW: 60295.5 Da    PI: 4.7278
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004516250.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.69.2e-1101435191374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svsel.ykalppsetsekn......sseelaalklfsev 87 
                     lv++Ll+cAeav  +d+++a+ lL+++  la+p+gd++qR+  +f+++L+ rl+    +++ ++  + ++++++n       +++l a+kl++++
  XP_004516250.1 143 LVHTLLACAEAVGCRDTHQANLLLNKIWSLANPSGDSLQRVSYCFAKGLKCRLSLyPHNNVlSNGTTITKSASSNdvslitWEKKLEAFKLLYQT 237
                     689*************************************************9875444440444455555555567888788999999****** PP

            GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl. 181
                     +P++ f++++aN+aI +a + ++ +HiiD+ +++ +QWp+L++ LasRpegpp+lRiTg++  +++++++l++  + L + A+++g+ +ef ++ 
  XP_004516250.1 238 TPYIAFGYMAANEAICQASKIKSSIHIIDLRMEHTFQWPSLIRNLASRPEGPPKLRITGFNT-NEDNTKKLQTSMSFLVEEASSFGIVLEFCIIs 331
                     **************************************************************.668999************************94 PP

            GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                      a + + l++e+L++++gE+l+ n++lqlh+ ++es    +   e+L+ +k+lsP  ++vveq+++hn++ Fl rfle+l+yysa+fdslea++ 
  XP_004516250.1 332 EAATPSLLTIENLKLRKGESLVFNSILQLHKYVKESRGYLK---EILQSIKKLSPITLTVVEQDTNHNGPFFLGRFLESLHYYSAIFDSLEATMV 423
                     45588999*************************88877777...9************************************************** PP

            GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                     r+s +r+k+Er+ ++ ei+nvva eg +r+erhe++e+Wr++l++ GF+ +pl+   ++qa+++l+ ++ dgy++ +e+g+l+lgWk+r+++++S
  XP_004516250.1 424 RNSAQRMKIERVHFADEICNVVAYEGPDRIERHERVEQWRRQLGRGGFQVMPLK--CTSQARMMLSVYDCDGYTLSCEKGCLLLGWKGRSIIMAS 516
                     *****************************************************7..679************************************ PP

            GRAS 372 aWr 374
                     aW+
  XP_004516250.1 517 AWQ 519
                     **6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.51117501IPR005202Transcription factor GRAS
PfamPF035143.2E-107143519IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MWLSFYMDES INHDFPIRRF CPARMDQDQE GEFHDQETVL DEIELCTSEI DDFVDSFINM  60
DPYEDQEESL EEKKHQSFDH FIVNEDNDDG DAYSMMVIND VIGYVPTIME DEELEICENT  120
TINMESKDEE QAIRLGMNQG LDLVHTLLAC AEAVGCRDTH QANLLLNKIW SLANPSGDSL  180
QRVSYCFAKG LKCRLSLYPH NNVLSNGTTI TKSASSNDVS LITWEKKLEA FKLLYQTTPY  240
IAFGYMAANE AICQASKIKS SIHIIDLRME HTFQWPSLIR NLASRPEGPP KLRITGFNTN  300
EDNTKKLQTS MSFLVEEASS FGIVLEFCII SEAATPSLLT IENLKLRKGE SLVFNSILQL  360
HKYVKESRGY LKEILQSIKK LSPITLTVVE QDTNHNGPFF LGRFLESLHY YSAIFDSLEA  420
TMVRNSAQRM KIERVHFADE ICNVVAYEGP DRIERHERVE QWRRQLGRGG FQVMPLKCTS  480
QARMMLSVYD CDGYTLSCEK GCLLLGWKGR SIIMASAWQV SSLEKGVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-6515051825377Protein SCARECROW
5b3h_D5e-6515051825377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004516250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004516250.20.0DELLA protein RGL1-like
TrEMBLA0A1S2Z7560.0A0A1S2Z756_CICAR; DELLA protein RGL1-like
STRINGXP_004516250.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-80RGA-like 1