PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004516113.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NF-YB

Protein Properties

Length: 227aa MW: 24835.7 Da PI: 4.1851

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004516113.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	96.1	3.1e-30	48	136	4	92
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 ++ lPi nv+ im+k lP ++kis+ ake+ ++ +s+fi +vt++a+++cq e r + +ddllwa+ lGf+dy+e l++y ++yr XP_004516113.1 48 DKSTLPIKNVTTIMRKGLPPKSKISNGAKEMAEQSASKFINLVTKKAAERCQSESRIIMGADDLLWAMKILGFNDYIEGLTLYAQRYRC 136 4568***********************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.8E-26	47	136	IPR009072	Histone-fold
SuperFamily	SSF47113	4.61E-20	50	135	IPR009072	Histone-fold
Pfam	PF00808	1.3E-14	51	115	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MERGDSFIHY GQNSNSDSGS FMLQQSDVPS ITEAPKNDGS VPQVAMQDKS TLPIKNVTTI 60 MRKGLPPKSK ISNGAKEMAE QSASKFINLV TKKAAERCQS ESRIIMGADD LLWAMKILGF 120 NDYIEGLTLY AQRYRCSNGL GPMQPVVESP KPTLPSLPPS PDDVGPNSSM SPNTTIEMYD 180 AMDLDEFWAG LDDLGIGPSD NASTSFDTSV EFNFDSMFGE ENDEMNH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-26	39	135	1	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004516113.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004516113.2	1e-169	nuclear transcription factor Y subunit B-5-like
TrEMBL	A0A1S2Z6W5	1e-167	A0A1S2Z6W5_CICAR; nuclear transcription factor Y subunit B-5-like
STRING	XP_004516113.1	1e-168	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2728	32	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	1e-28	NF-YB family protein