PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004515789.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MIKC_MADS

Protein Properties

Length: 203aa MW: 24044.5 Da PI: 9.2177

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004515789.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.9	1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+s+ XP_004515789.1 9 KRIENESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFST 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.7E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.226	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.75E-40	3	70	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-31	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.88E-32	3	73	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-31	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	14.377	87	179	IPR002487	Transcription factor, K-box
Pfam	PF01486	3.3E-22	88	171	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010048	Biological Process	vernalization response
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MVRGKTQMKR IENESNRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFST RGKLYEFSTS 60 SINKTVERYQ RKIKDFTLNT KGIQENTQHL KECDNSATKK IEHLELSKRK LLGNELDTCA 120 IDELQQIEEQ IERSLSKIRA RKNQLFREQI EKLREQERYL LEENRHLRDK CRIEQDNELI 180 TESLQGGEVE TELFIGRPER RMV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	3e-20	1	69	1	69	MEF2C
5f28_B	3e-20	1	69	1	69	MEF2C
5f28_C	3e-20	1	69	1	69	MEF2C
5f28_D	3e-20	1	69	1	69	MEF2C
6byy_A	3e-20	1	69	1	69	MEF2 CHIMERA
6byy_B	3e-20	1	69	1	69	MEF2 CHIMERA
6byy_C	3e-20	1	69	1	69	MEF2 CHIMERA
6byy_D	3e-20	1	69	1	69	MEF2 CHIMERA
6bz1_A	3e-20	1	69	1	69	MEF2 CHIMERA
6bz1_B	3e-20	1	69	1	69	MEF2 CHIMERA
6bz1_C	3e-20	1	69	1	69	MEF2 CHIMERA
6bz1_D	3e-20	1	69	1	69	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269\|PubMed:16778081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004515789.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269\|PubMed:16778081}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ738045	1e-153	HQ738045.1 Medicago truncatula isolate L0673C Soc1b gene, partial sequence.
GenBank	HQ738046	1e-153	HQ738046.1 Medicago truncatula isolate L0401C Soc1b gene, partial sequence.
GenBank	HQ738047	1e-153	HQ738047.1 Medicago truncatula isolate L0448B Soc1b gene, partial sequence.
GenBank	HQ738048	1e-153	HQ738048.1 Medicago truncatula isolate L0526C Soc1b gene, partial sequence.
GenBank	HQ738049	1e-153	HQ738049.1 Medicago truncatula isolate L0640C Soc1b gene, partial sequence.
GenBank	HQ738050	1e-153	HQ738050.1 Medicago truncatula isolate L0425C Soc1b gene, partial sequence.
GenBank	HQ738051	1e-153	HQ738051.1 Medicago truncatula isolate L0421B Soc1b gene, partial sequence.
GenBank	HQ738052	1e-153	HQ738052.1 Medicago truncatula isolate L0547B Soc1b gene, partial sequence.
GenBank	HQ738053	1e-153	HQ738053.1 Medicago truncatula isolate L0233C Soc1b gene, partial sequence.
GenBank	HQ738054	1e-153	HQ738054.1 Medicago truncatula isolate L0372B Soc1b gene, partial sequence.
GenBank	HQ738055	1e-153	HQ738055.1 Medicago truncatula isolate L0216B Soc1b gene, partial sequence.
GenBank	HQ738057	1e-153	HQ738057.1 Medicago truncatula isolate L0546B Soc1b gene, partial sequence.
GenBank	HQ738058	1e-153	HQ738058.1 Medicago truncatula isolate L0166B Soc1b gene, partial sequence.
GenBank	HQ738060	1e-153	HQ738060.1 Medicago truncatula isolate L0404B Soc1b gene, partial sequence.
GenBank	HQ738061	1e-153	HQ738061.1 Medicago truncatula isolate L0410B Soc1b gene, partial sequence.
GenBank	HQ738062	1e-153	HQ738062.1 Medicago truncatula isolate L0306C Soc1b gene, partial sequence.
GenBank	HQ738063	1e-153	HQ738063.1 Medicago truncatula isolate L0414C Soc1b gene, partial sequence.
GenBank	HQ738065	1e-153	HQ738065.1 Medicago truncatula isolate L0330B Soc1b gene, partial sequence.
GenBank	HQ738067	1e-153	HQ738067.1 Medicago truncatula isolate L0732D Soc1b gene, partial sequence.
GenBank	HQ738068	1e-153	HQ738068.1 Medicago tornata isolate L0750D Soc1b gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004515788.1	1e-144	agamous-like MADS-box protein AGL19
Refseq	XP_004515789.1	1e-144	agamous-like MADS-box protein AGL19
Swissprot	O82743	4e-74	AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBL	A0A1S2Z669	1e-142	A0A1S2Z669_CICAR; agamous-like MADS-box protein AGL19
STRING	XP_004515788.1	1e-143	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22950.1	1e-68	AGAMOUS-like 19

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Suter L,Rüegg M,Zemp N,Hennig L,Widmer A Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis. Plant Physiol., 2014. 166(4): p. 1928-42 [PMID:25339407]