PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004515788.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 203aa MW: 24044.5 Da PI: 9.2177 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.9 | 1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+s+ XP_004515788.1 9 KRIENESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFST 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.7E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.226 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.75E-40 | 3 | 70 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-32 | 3 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.377 | 87 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.3E-22 | 88 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MVRGKTQMKR IENESNRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFST RGKLYEFSTS 60 SINKTVERYQ RKIKDFTLNT KGIQENTQHL KECDNSATKK IEHLELSKRK LLGNELDTCA 120 IDELQQIEEQ IERSLSKIRA RKNQLFREQI EKLREQERYL LEENRHLRDK CRIEQDNELI 180 TESLQGGEVE TELFIGRPER RMV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
6byy_A | 3e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 3e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 3e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 3e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 3e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 3e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 3e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 3e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004515788.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ738045 | 1e-153 | HQ738045.1 Medicago truncatula isolate L0673C Soc1b gene, partial sequence. | |||
GenBank | HQ738046 | 1e-153 | HQ738046.1 Medicago truncatula isolate L0401C Soc1b gene, partial sequence. | |||
GenBank | HQ738047 | 1e-153 | HQ738047.1 Medicago truncatula isolate L0448B Soc1b gene, partial sequence. | |||
GenBank | HQ738048 | 1e-153 | HQ738048.1 Medicago truncatula isolate L0526C Soc1b gene, partial sequence. | |||
GenBank | HQ738049 | 1e-153 | HQ738049.1 Medicago truncatula isolate L0640C Soc1b gene, partial sequence. | |||
GenBank | HQ738050 | 1e-153 | HQ738050.1 Medicago truncatula isolate L0425C Soc1b gene, partial sequence. | |||
GenBank | HQ738051 | 1e-153 | HQ738051.1 Medicago truncatula isolate L0421B Soc1b gene, partial sequence. | |||
GenBank | HQ738052 | 1e-153 | HQ738052.1 Medicago truncatula isolate L0547B Soc1b gene, partial sequence. | |||
GenBank | HQ738053 | 1e-153 | HQ738053.1 Medicago truncatula isolate L0233C Soc1b gene, partial sequence. | |||
GenBank | HQ738054 | 1e-153 | HQ738054.1 Medicago truncatula isolate L0372B Soc1b gene, partial sequence. | |||
GenBank | HQ738055 | 1e-153 | HQ738055.1 Medicago truncatula isolate L0216B Soc1b gene, partial sequence. | |||
GenBank | HQ738057 | 1e-153 | HQ738057.1 Medicago truncatula isolate L0546B Soc1b gene, partial sequence. | |||
GenBank | HQ738058 | 1e-153 | HQ738058.1 Medicago truncatula isolate L0166B Soc1b gene, partial sequence. | |||
GenBank | HQ738060 | 1e-153 | HQ738060.1 Medicago truncatula isolate L0404B Soc1b gene, partial sequence. | |||
GenBank | HQ738061 | 1e-153 | HQ738061.1 Medicago truncatula isolate L0410B Soc1b gene, partial sequence. | |||
GenBank | HQ738062 | 1e-153 | HQ738062.1 Medicago truncatula isolate L0306C Soc1b gene, partial sequence. | |||
GenBank | HQ738063 | 1e-153 | HQ738063.1 Medicago truncatula isolate L0414C Soc1b gene, partial sequence. | |||
GenBank | HQ738065 | 1e-153 | HQ738065.1 Medicago truncatula isolate L0330B Soc1b gene, partial sequence. | |||
GenBank | HQ738067 | 1e-153 | HQ738067.1 Medicago truncatula isolate L0732D Soc1b gene, partial sequence. | |||
GenBank | HQ738068 | 1e-153 | HQ738068.1 Medicago tornata isolate L0750D Soc1b gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004515788.1 | 1e-144 | agamous-like MADS-box protein AGL19 | ||||
Refseq | XP_004515789.1 | 1e-144 | agamous-like MADS-box protein AGL19 | ||||
Swissprot | O82743 | 4e-74 | AGL19_ARATH; Agamous-like MADS-box protein AGL19 | ||||
TrEMBL | A0A1S2Z669 | 1e-142 | A0A1S2Z669_CICAR; agamous-like MADS-box protein AGL19 | ||||
STRING | XP_004515788.1 | 1e-143 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF666 | 30 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 1e-68 | AGAMOUS-like 19 |
Publications ? help Back to Top | |||
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