PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004515711.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HSF
Protein Properties Length: 332aa    MW: 36929.5 Da    PI: 7.3071
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004515711.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.31.8e-36301212102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++
  XP_004515711.1  30 FLTKTYNLVEDQSIDDVISWNDDGSTFIVWNPTIFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNEFFRRGDKRLLCE 115
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_004515711.1 116 IQRRKI 121
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-3722114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-5626119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.8E-3527119IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-3230119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-203053IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-206880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-208193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAPPLPPVEN NGESTTASVL ESQRSIPTPF LTKTYNLVED QSIDDVISWN DDGSTFIVWN  60
PTIFARDLLP KYFKHNNFSS FVRQLNTYGF RKVVPDRWEF SNEFFRRGDK RLLCEIQRRK  120
ISTPAPSPTS VSAAATAETA TVAVPSPIPL TVIPTAMPII SPSNSGDEQV ISSSSSPLRA  180
PAELLDENER LRKENVLLNK ELAEIKSLCN NIYTLMSSYA NNNNNNNNQS DGGAQGSRES  240
GMTAVKPLDL MPEEVKRGSG VKEMNPKLFG VAIGVKRTRE NGCESGEDTL LRLHQPGSTD  300
VKSEPLDCQY HRDNKQTPWL NRCRRANQSL CK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-223011929129Heat shock factor protein 1
5d5v_B3e-223011929129Heat shock factor protein 1
5d5v_D3e-223011929129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004515711.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515711.10.0heat stress transcription factor B-2a
SwissprotQ9SCW43e-92HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A1S2Z6160.0A0A1S2Z616_CICAR; heat stress transcription factor B-2a
STRINGXP_004515711.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-91heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]