PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004515372.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 299aa    MW: 32684.4 Da    PI: 7.7401
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004515372.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-18137191256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  XP_004515372.1 137 RKKLRLSKEQSVLLEETFKEHNTLNPKQKQALAKQLNLMPRQVEVWFQNRRARTK 191
                     788899***********************************************98 PP
2HD-ZIP_I/II125.82e-40137226191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq+ lLEe+F+e+++L+p++K++la++L+l prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  XP_004515372.1 137 RKKLRLSKEQSVLLEETFKEHNTLNPKQKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELR-AL 226
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.9E-261102IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466891.07E-18122194IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-18130192IPR009057Homeodomain-like
PROSITE profilePS5007117.41133193IPR001356Homeobox domain
SMARTSM003898.0E-16135197IPR001356Homeobox domain
PfamPF000461.2E-15137191IPR001356Homeobox domain
CDDcd000865.49E-15137194No hitNo description
PROSITE patternPS000270168191IPR017970Homeobox, conserved site
PfamPF021833.3E-11193227IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.5E-27193236IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGDKEDELGL GLSLSLSLGY GANANNAPLK VTHMHKPPQS VPNQRVSFNN FFHFHDLSSE  60
TRSFIGGIDV NSPATAACDD ENGGSSPNST VSSISGKRSE REGNGEENDA VERASCSRGG  120
SDDDDGGGCG GDGDSSRKKL RLSKEQSVLL EETFKEHNTL NPKQKQALAK QLNLMPRQVE  180
VWFQNRRART KLKQTEVDCE YLKRCCETLT EENRRLQKEV QELRALKLSP QLYMHMNPPT  240
TLTMCPSCER VAVSSASSSS ANVPSALAPA NRNSIGPSVQ RPVPLNPWAA MSIQNRSRP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141SRKKLRL
2185193RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004515372.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358922e-56AC235892.2 Glycine max clone GM_WBc0089E01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515372.10.0homeobox-leucine zipper protein HAT3
SwissprotP466024e-98HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A1S2Z5D80.0A0A1S2Z5D8_CICAR; homeobox-leucine zipper protein HAT3
STRINGXP_004515372.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-84homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]