PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004514021.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 610aa    MW: 68287 Da    PI: 4.6124
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004514021.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.11.1e-50231491127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrF+Ptdeel+++yL+ k++g+  e+  vi+e+d++k+ePwdLp  + v++++ ew+fF+++d+ky++g+r nrat++gyWkatgkd++++
  XP_004514021.1  23 LPLGFRFRPTDEELIDFYLRLKINGNGDEV-WVIREIDVCKWEPWDLPdlSVVRNKDPEWFFFCPQDRKYPNGSRLNRATNHGYWKATGKDRKIK 116
                     699************************999.89**************96447777888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyr 127
                     s + +l+g+kktLvf+ grapkg++t+Wvmheyr
  XP_004514021.1 117 S-GPTLIGMKKTLVFHAGRAPKGKRTNWVMHEYR 149
                     *.999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-6115173IPR003441NAC domain
PROSITE profilePS5100555.35423173IPR003441NAC domain
PfamPF023651.5E-2624149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MGAVDCLPPS HAEEMAVLSL NKLPLGFRFR PTDEELIDFY LRLKINGNGD EVWVIREIDV  60
CKWEPWDLPD LSVVRNKDPE WFFFCPQDRK YPNGSRLNRA TNHGYWKATG KDRKIKSGPT  120
LIGMKKTLVF HAGRAPKGKR TNWVMHEYRP TLKELDGTNP GQNPYVLCRL FKKQDESIES  180
SNCGEVEQTA STPMTANYSP EEIQSDPNVV PGASSSQVTE DYKHLAAIPE NSEEAISNFL  240
TPADCYRDAC NASDAQNQIV TTAAEEDQLF NLDIFDSPQF EQLDDKLFSP VHAHFPQDFF  300
YETNNEVEFQ YGTNETDVSD FFNSAVNWDE VSREASSSLE LKSDLLHVKD NGSCSDSEVE  360
MANMMHLQPL HAYPEGVTPT PQNSDAGLFY SSFFSTGPTP TVVDECMGQT PAVVDESMGQ  420
TPAVVDGYEQ MRNLDTVVQG DTGIRIRTRQ RRNEQPITNP VMPAQGSAPR RILLGGFVTH  480
SLVSEETTKD RSSAPVNHNS ETIISREKQT SEKHAAGESA TDTNINDVDE LEKTSLASDD  540
TRKISQQHVT TTESILEWKD SLLGRRVCYS SKISSNRAMW SSVLAVSAIV LVSLVLFVNI  600
WGYLRIETAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-442317615171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004514021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004514021.10.0protein NTM1-like 9
TrEMBLA0A1S2Z2T30.0A0A1S2Z2T3_CICAR; protein NTM1-like 9
STRINGXP_004514021.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-98NAC transcription factor-like 9