PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004513994.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bZIP | ||||||||
Protein Properties | Length: 462aa MW: 51641 Da PI: 5.7813 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.5 | 4.5e-11 | 175 | 215 | 3 | 42 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLeaeN 42 + k rr+++NReAAr+sR+RKka++++Le +vk L+ e XP_004513994.1 175 DHKTLRRLAQNREAARKSRLRKKAYVQQLESsRVKLLQLEQ 215 67899************************963788777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.9E-8 | 173 | 236 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.105 | 175 | 219 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.8E-8 | 176 | 214 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 1.60E-23 | 177 | 229 | No hit | No description |
SuperFamily | SSF57959 | 4.66E-7 | 177 | 219 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-7 | 179 | 212 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 180 | 195 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.9E-27 | 260 | 334 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MQSFKTAQSN SQLYCHQSFL LRGDDINRNP MRFSDLGDFH HSSPFFQQQD AVDLSSSCMF 60 SIVKSSNVVI GGSNMQYGTI NTNVGSAEIA TAGAGCSDTA QQQLIYNKGI ALPMANCHVE 120 NWGDSGMADN SQQTDDTSTD IDVDVDIDID TDDKHQSGTN MVSHSKDQTN FKAEDHKTLR 180 RLAQNREAAR KSRLRKKAYV QQLESSRVKL LQLEQELQRA HQQGIFIATP GDQVHLPVGN 240 GALAFDMDYA HWVDEHQHLL NDLQSGLNSQ MGDNELHLLV DGVMEHYNEL SRLKSIGAKA 300 DIFHMLYGLW KTPVERCFIW LGGFRPSDLL KIIKSHLEPL TDHELIGICN LQQTSEQSED 360 ALTQGMEALQ QSILEMLSTT SSVSSTGSGN VADYMDQMAI AMSKLAVLEE FLHKADLLKQ 420 ATLQQLQRIL TTRQTARALL VKNDYISRLR ALSSLWLARP RE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004513994.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU302332 | 5e-52 | CU302332.2 Medicago truncatula chromosome 5 clone mth2-139e15, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513994.1 | 0.0 | transcription factor TGA2.3-like isoform X2 | ||||
Swissprot | Q41558 | 1e-153 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
TrEMBL | A0A1S2Z2R3 | 0.0 | A0A1S2Z2R3_CICAR; transcription factor TGA2.3-like isoform X2 | ||||
STRING | XP_004513994.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6022 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68640.1 | 1e-123 | bZIP family protein |