PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513765.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 289aa    MW: 31702.9 Da    PI: 8.4981
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513765.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023224246223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp Cg  Fs+  +L+ H ++ H
  XP_004513765.1 224 QCPQCGAKFSSVTTLVDHVQKsH 246
                     7******************9988 PP
2zf-C2H216.91.7e-05261283223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp+C+k F+++  L+ H  + H
  XP_004513765.1 261 VCPKCSKGFRDPVALVEHVERdH 283
                     7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183103.53E-12459No hitNo description
Gene3DG3DSA:4.10.1110.102.3E-101053IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.6931056IPR000058Zinc finger, AN1-type
PfamPF014287.9E-131351IPR000058Zinc finger, AN1-type
SMARTSM001545.9E-41352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.3E-1090159IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.19E-993146No hitNo description
PROSITE profilePS510397.84998147IPR000058Zinc finger, AN1-type
PfamPF014283.6E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.12101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.182223251IPR007087Zinc finger, C2H2
SMARTSM003550.008223246IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.17E-5224279No hitNo description
PfamPF138946.6E-4224246No hitNo description
PROSITE patternPS000280225246IPR007087Zinc finger, C2H2
PROSITE profilePS501578.725260288IPR007087Zinc finger, C2H2
SMARTSM003555.4260283IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280262283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGTPEFPDLG KHCAVSDCKL IDFLPFTCDR CNQVYCLEHR SFIKHQCTKA DKQDVTVVIC  60
PLCAKGVRLI PDQDPNITWE NHVNTECDPS NYEKVTKKKK CPAAGCKEIL VFSNTIKCRD  120
CNVEHCLKHR FGPDHKCPGP KKLETTFSFM NLMNKNRKQE SKTKSSSTTS SSSSNWTTSF  180
LNAASNIRAS AEAGMSKLSG EINQAWGTSS NGAGKSNGSG QVEQCPQCGA KFSSVTTLVD  240
HVQKSHERSG NRSGPKVTID VCPKCSKGFR DPVALVEHVE RDHGGTSRA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004513765.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0525700.0BT052570.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-B-14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513765.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B91e-127SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A1S2Z2C70.0A0A1S2Z2C7_CICAR; zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
STRINGXP_004513765.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-122C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]