PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513402.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bZIP
Protein Properties Length: 304aa    MW: 33373.7 Da    PI: 8.1412
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513402.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.91.4e-15224285162
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                     +ke+kr +r+ +NR++A+  R+RKka++  Le kv  Le++N++Lk++l++l++e + l++ 
  XP_004513402.1 224 DKESKRLKRLLRNRVSAQQARERKKAYLSDLESKVNDLEKKNSELKEKLSTLQNENQMLRQI 285
                     689******************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.18E-341198No hitNo description
Gene3DG3DSA:3.30.40.103.7E-311194IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF145697.2E-401692IPR027934Cellulose synthase, RING-type zinc finger
PROSITE profilePS500898.6092672IPR001841Zinc finger, RING-type
SMARTSM003385.3E-17224288IPR004827Basic-leucine zipper domain
PfamPF001708.0E-14225286IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.921226289IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-17228288No hitNo description
SuperFamilySSF579595.94E-14228286No hitNo description
CDDcd147048.64E-20229280No hitNo description
PROSITE patternPS000360231246IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEGIATGSRE RNSGSKPLKN LNGQICQICG DTIGLTTTGN VFVACHECAF PLCNPCYEYE  60
RKNVSQSCPQ CKTRYKSHKE GTRVKGDDDE DDLRNEVKYG SKTGWQWEED ADLSSSSGHD  120
SQQNLRLANG QLISSEIPCA TSDTQSVQTT SGPLGQSENV HSHPYVDPKQ PGLESDEEIR  180
RVPEMGGESA GTSASRPGNG STAGPERAQG AVEGQKKRGR SPADKESKRL KRLLRNRVSA  240
QQARERKKAY LSDLESKVND LEKKNSELKE KLSTLQNENQ MLRQILKNTT ASRRGNNSGT  300
NNAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1weo_A9e-301284577cellulose synthase, catalytic subunit (IRX3)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004513402.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3741220.0FJ374122.1 Pisum sativum cultivar Torsdag LONG1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513402.10.0transcription factor HY5
TrEMBLA0A1S2Z1N90.0A0A1S2Z1N9_CICAR; transcription factor HY5
STRINGXP_004513402.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70643248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.13e-46bZIP family protein