PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513210.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 274aa    MW: 31169 Da    PI: 5.906
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513210.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72e-111763248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W +eEd +    v ++G+ +W++I+++ g +R++k+c++rw++y+
   XP_004513210.1 17 GVWIAEEDTKTPTFVLEHGSSNWTSIPKKTGVKRCGKSCRLRWNNYM 63
                     6799999999999******************99************97 PP
2Myb_DNA-binding40.28e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++T +E++l++++++  G++ W+ Ia+ ++ gRt++++k+ w++
   XP_004513210.1  69 DNFTSQEEDLIIKLHAAIGSR-WSIIAQQLP-GRTDNDVKNNWNT 111
                      689******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.5581163IPR017877Myb-like domain
SuperFamilySSF466898.59E-2314109IPR009057Homeodomain-like
SMARTSM007177.2E-51565IPR001005SANT/Myb domain
PfamPF002491.5E-101762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-171872IPR009057Homeodomain-like
CDDcd001672.35E-61963No hitNo description
PROSITE profilePS5129420.82563117IPR017930Myb domain
SMARTSM007171.1E-1067115IPR001005SANT/Myb domain
CDDcd001677.66E-870113No hitNo description
PfamPF002491.8E-1170111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2073117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVRSACYEKD SVKIKSGVWI AEEDTKTPTF VLEHGSSNWT SIPKKTGVKR CGKSCRLRWN  60
NYMPDLKHDN FTSQEEDLII KLHAAIGSRW SIIAQQLPGR TDNDVKNNWN TKLKKKLSQM  120
GIDPVTHKPF SKLIADYGNI DPYQFNQQQT LQTTGNSSFM VTKSHSDDDF SIVKGDSNCT  180
NIKNETNPTL VDAFPPFSWN DFLLEDAFAP PTNNQEQQIL FSKENVMSQN GKMKEAMSHQ  240
VSSCSDISFV EAILDQENEM FLSFPHLLEE PSNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23171178108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA sequence 5'-CCAACC-3'. Regulates directly PME5, UND and GLOX1 (PubMed:21673079). Essential for tapetum development in anthers and microsporogenesis (PubMed:12848824, PubMed:21673079). Regulates the timing of tapetal programmed cell death (PCD) which is critical for pollen development. May act through the activation of UND, encoding an A1 aspartic protease (PubMed:21673079). Required for anther development by regulating tapetum development, callose dissolution and exine formation. Acts upstream of A6 and FAR2/MS2, two genes required for pollen exine formation (PubMed:17727613). Negatively regulates trichome endoreduplication and trichome branching (PubMed:12848824). {ECO:0000269|PubMed:12848824, ECO:0000269|PubMed:17727613, ECO:0000269|PubMed:21673079}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004513210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150352e-50AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513209.10.0transcription factor MYB35-like
SwissprotQ9XHV04e-57MYB80_ARATH; Transcription factor MYB80
TrEMBLA0A1S2Z1B30.0A0A1S2Z1B3_CICAR; transcription factor MYB35-like
STRINGXP_004513209.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.19e-54MYB family protein
Publications ? help Back to Top
  1. Li SF,Iacuone S,Parish RW
    Suppression and restoration of male fertility using a transcription factor.
    Plant Biotechnol. J., 2007. 5(2): p. 297-312
    [PMID:17309685]
  2. Qian H, et al.
    Trace concentrations of imazethapyr (IM) affect floral organs development and reproduction in Arabidopsis thaliana: IM-induced inhibition of key genes regulating anther and pollen biosynthesis.
    Ecotoxicology, 2015. 24(1): p. 163-71
    [PMID:25348600]
  3. Xiong SX, et al.
    The transcription factors MS188 and AMS form a complex to activate the expression of CYP703A2 for sporopollenin biosynthesis in Arabidopsis thaliana.
    Plant J., 2016. 88(6): p. 936-946
    [PMID:27460657]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]
  5. Li DD,Xue JS,Zhu J,Yang ZN
    Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 1559
    [PMID:28955355]