PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511786.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 227aa    MW: 25796.2 Da    PI: 6.6264
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511786.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001182104123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C + F++   L  H+++H
  XP_004511786.1  82 YTCTFCRREFRSAQALGGHMNVH 104
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.13E-579109No hitNo description
Gene3DG3DSA:3.30.160.607.4E-480107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.15782109IPR007087Zinc finger, C2H2
PfamPF139121.7E-582105IPR007087Zinc finger, C2H2
SMARTSM003550.006682104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAADIGFVSM TQIQNSSKSQ SQKHHKNKTK QNPNSTTASS TWMWNPKEEQ EHEEEDDDSW  60
EVRAFAEDTR NIMNTTWPPR SYTCTFCRRE FRSAQALGGH MNVHRRDRAR LHQNHHHHPP  120
SLPSSPFINI PPQNLVANGG LCFLYHLPNP NNNSNNGESP STLLSISSSS YPPNNLMMQM  180
QTLSPSYSTK VEQQQQQHGS STSIDDNNGH DEIEELDLEL RLGHKPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-1377104229superman protein
2l1o_A2e-1377104229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511786.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511786.11e-170transcriptional regulator SUPERMAN-like
TrEMBLA0A1S2YY381e-169A0A1S2YY38_CICAR; transcriptional regulator SUPERMAN-like
STRINGXP_004511786.11e-170(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.16e-27C2H2 family protein