PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004511604.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 25506.2 Da PI: 4.8333 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.1e-18 | 68 | 119 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +++Wv+e r+p++n + r++lg++ t+e+Aa+a++ a++ l+g XP_004511604.1 68 PVYRGVRARD-NNKWVCEMRVPNNN--KSRIWLGTYPTPEMAARAHDVAALTLRG 119 68*****999.8*********9766..5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.4E-13 | 68 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-29 | 69 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-21 | 69 | 129 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.246 | 69 | 127 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-26 | 69 | 133 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.14E-26 | 70 | 129 | No hit | No description |
PRINTS | PR00367 | 7.9E-7 | 70 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-7 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDDIFMSSLN YATQQHLNIS SSSSSSSSTS ETTSYSTNRT TSNEEVILAS TRPKKRAGRK 60 VFKETRHPVY RGVRARDNNK WVCEMRVPNN NKSRIWLGTY PTPEMAARAH DVAALTLRGQ 120 SACLNFADSA WRLRLPETTD AVEIRRAAME AAQLFAVEDS QCEQQSVGEE QVVPVVTSEY 180 DEEMNDLILS IANEPLRSPP PSMTDYYGGN DNVDMYDTQV SLWNFST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00002 | PBM | Transfer from 475045 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004511604.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004511604.1 | 1e-170 | dehydration-responsive element-binding protein 1E-like | ||||
Swissprot | Q9SGJ6 | 4e-56 | DRE1E_ARATH; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | A0A1S2YXP8 | 1e-169 | A0A1S2YXP8_CICAR; dehydration-responsive element-binding protein 1E-like | ||||
STRING | XP_004511604.1 | 1e-170 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63030.2 | 6e-58 | ERF family protein |