PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511595.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 468aa    MW: 52897.6 Da    PI: 8.7943
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511595.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-165498146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g WT+eEd ll++ vk++Gg + k Ia+++  g t++qc +rwqk
   XP_004511595.1 54 KGCWTEEEDNLLIETVKKHGGSNRKNIAEYLH-GQTDNQCLHRWQK 98
                     799*****************************.************9 PP
2Myb_DNA-binding56.37.3e-18107152248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +WT+eEde l+++v+++G ++W+ Ia+ m+  R +kqc++rw+++l
   XP_004511595.1 107 RSWTKEEDESLIELVRKYGFKRWSFIAKFMP-DRVGKQCRERWHNHL 152
                      68*****************************.*************97 PP
3Myb_DNA-binding506.6e-16158200145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eE+ +l+  ++ +G++ W+ Iar ++ gR+++ +k++w+
   XP_004511595.1 158 KDAWTEEEESKLALFHQIYGSR-WSEIARFLP-GRSDNAIKNHWN 200
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.50349100IPR017930Myb domain
SuperFamilySSF466891.93E-1250106IPR009057Homeodomain-like
SMARTSM007175.5E-1053102IPR001005SANT/Myb domain
PfamPF002493.5E-135498IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-1756111IPR009057Homeodomain-like
CDDcd001672.36E-105799No hitNo description
PROSITE profilePS5129430.422101156IPR017930Myb domain
SuperFamilySSF466895.75E-32103199IPR009057Homeodomain-like
SMARTSM007177.6E-17105154IPR001005SANT/Myb domain
CDDcd001672.45E-16108152No hitNo description
PfamPF139212.9E-19109169No hitNo description
Gene3DG3DSA:1.10.10.605.1E-27112159IPR009057Homeodomain-like
SMARTSM007173.1E-15157205IPR001005SANT/Myb domain
PROSITE profilePS5129417.075157207IPR017930Myb domain
CDDcd001672.11E-11160200No hitNo description
Gene3DG3DSA:1.10.10.605.0E-20160206IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MFEVKNKLND IEFDSPHRDL LHLCLSSPNC NSNTCLLEAT SVTGRIKAQV SSTKGCWTEE  60
EDNLLIETVK KHGGSNRKNI AEYLHGQTDN QCLHRWQKVS NPDLVKRSWT KEEDESLIEL  120
VRKYGFKRWS FIAKFMPDRV GKQCRERWHN HLDPAIKKDA WTEEEESKLA LFHQIYGSRW  180
SEIARFLPGR SDNAIKNHWN CSMKKKSSTS PIRCDDNVST TSYCSSVIKP AHDLFKAVDQ  240
SSPKQSHWLK HNADNFPTKM IIQSSSVEEL CSEKNSFGLA TPTRASGQGE RRLVNLPNET  300
ETVKHMNSLD NSLDMPATNM DCFSLATQVK SPKRQKVSFS DSKFIASNES DSFHLSYSKL  360
ASHEKKGQVG RENSNKIISG PDRADVTSSE YDDYFGVPPS SVPKVSPEYV LRSLAMTYKN  420
IPSIIRKRTS KKAFSAANCG KSLTPSRIVD STHEVGCVIG LDNLKLNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-59542069158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-59542069158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511595.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511595.10.0transcription factor MYB3R-3-like isoform X2
TrEMBLA0A1S2YXP30.0A0A1S2YXP3_CICAR; transcription factor MYB3R-3-like isoform X2
STRINGXP_004511594.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.23e-67myb domain protein 3r-4