PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004511446.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 318aa MW: 35379.3 Da PI: 5.2634 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.2 | 1.9e-10 | 238 | 278 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq XP_004511446.1 238 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 278 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.053 | 228 | 277 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-14 | 229 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-12 | 233 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-11 | 234 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.40E-11 | 237 | 282 | No hit | No description |
Pfam | PF00010 | 9.5E-8 | 238 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MEPAELISEE WSSLSGLYTA EEADFMNHFL GLANANANAN SSLPQQHLYQ NSNESTILSV 60 TKNNSNFAAQ VPNSSNIFFP TTTDPVNNFG YISMGISIGD DCKFSPYITQ GNESKHTNDN 120 TDENIIADKD LQVPKECEIR RAGKRSRSSN EVPKNKRNVK SRKNIRCASL CSEENTSPVS 180 QDQTLSSCAS EDDMNSSHEL RREASSSLSQ DDSTALKLSG KSISSRGTAT DPQSLYARKR 240 RERINERLRI LQNLVPNGTK VDISTMLEEA VQYVKFLQLQ IKLLSSDDLW MYAPIAYNGM 300 NIGLELGITP TKDTKDMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004511446.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 7e-41 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004511446.1 | 0.0 | transcription factor bHLH84-like | ||||
TrEMBL | A0A1S2YXC7 | 0.0 | A0A1S2YXC7_CICAR; transcription factor bHLH84-like | ||||
STRING | XP_004511446.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 2e-50 | bHLH family protein |