PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004511159.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 854aa MW: 96876.1 Da PI: 6.4771

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004511159.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.8	1.7e-13	64	138	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA++vGFs+ + + ++ + +g i++ +f Cs+e ++++ ++C+a+lk++++ d +w vtk++++H+H+la XP_004511159.1 64 SFYEAYARHVGFSLHVGQFSRATPDGPIISWEFSCSREVLKRKNV--------------VSCNAMLKMERK-DVNWTVTKFVEDHSHSLA 138 5***********************************9988865..............56****99.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-10	64	138	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-30	267	359	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.832	544	582	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.0E-10	555	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.6E-8	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 854 aa Download sequence Send to blast
MEVEAVDEGE NDDKPASEND KFKKNQEQIM TANSTERQVN DEDGDACRKP QVGMVFESEE 60 AAKSFYEAYA RHVGFSLHVG QFSRATPDGP IISWEFSCSR EVLKRKNVVS CNAMLKMERK 120 DVNWTVTKFV EDHSHSLASS RKVQYLRPRR HFAGATRNVR ETSDGSNDSL VSMNGNHLES 180 NSIVRSSSPA EKSHSTRNIG SFAYVRSSRK RTLGKDAQIL LNYFKKMQGE NPGFYYAIQL 240 DDENCMTNVF WADARSRAAY NYFGDAVTFD TMYRPNQYQV PFAPFTGINH HGQMVLFGCA 300 LLLDESESSF TWLFKTWLSA MNDRPPISIT TDQDRAIQAA VVQVFPETRH CICKWHILRE 360 GQVRLAHIYL AHPSFYGELY SCINFSETVE HFESTWKSLL DKYDLQKNDW LEAVYNARKQ 420 WAPVYFRDTF FAALASNHGV TSFFDGYVNQ QTTLPLFFKQ YESSLEHSLE KEIEADYETI 480 CTTPSLKTPS PMEQQAANQY TKKIFAKFQE ELVETFAYTA DRVADGGAVS KYKVSKYEYD 540 YKAYTVSVTS DITGVKANCS CQMFEYSGIL CRHILTVFTV TNVLTLPPHF ILKRWTRNVK 600 YSVGADEIIQ DPLSIENLTF RFNSLCREAI KLAEEGAIAV ETYNAAMNAL RESAKMVSVM 660 KENIAKVTPP STRDNGSNQE DNSMKSPLSI SEAIPSLWPW QDSALHHYNL NDIGLPVNDL 720 NHPCIPPVDN FNGPPHNAVV LTCFKSMTWA IETKNSNPSS KVAVINMKLQ DYAQSPSGET 780 EVQFRVTKVT LEPMLQSMTY ISHQLTAPAN RVAVVNLKLQ DTKTSTGETQ VKFQVSRDML 840 GSMLSSMAYI REQL

Sequence ? help Back to Top

Protein Sequence Length: 854 aa Download sequence Send to blast

MEVEAVDEGE NDDKPASEND KFKKNQEQIM TANSTERQVN DEDGDACRKP QVGMVFESEE  60
AAKSFYEAYA RHVGFSLHVG QFSRATPDGP IISWEFSCSR EVLKRKNVVS CNAMLKMERK  120
DVNWTVTKFV EDHSHSLASS RKVQYLRPRR HFAGATRNVR ETSDGSNDSL VSMNGNHLES  180
NSIVRSSSPA EKSHSTRNIG SFAYVRSSRK RTLGKDAQIL LNYFKKMQGE NPGFYYAIQL  240
DDENCMTNVF WADARSRAAY NYFGDAVTFD TMYRPNQYQV PFAPFTGINH HGQMVLFGCA  300
LLLDESESSF TWLFKTWLSA MNDRPPISIT TDQDRAIQAA VVQVFPETRH CICKWHILRE  360
GQVRLAHIYL AHPSFYGELY SCINFSETVE HFESTWKSLL DKYDLQKNDW LEAVYNARKQ  420
WAPVYFRDTF FAALASNHGV TSFFDGYVNQ QTTLPLFFKQ YESSLEHSLE KEIEADYETI  480
CTTPSLKTPS PMEQQAANQY TKKIFAKFQE ELVETFAYTA DRVADGGAVS KYKVSKYEYD  540
YKAYTVSVTS DITGVKANCS CQMFEYSGIL CRHILTVFTV TNVLTLPPHF ILKRWTRNVK  600
YSVGADEIIQ DPLSIENLTF RFNSLCREAI KLAEEGAIAV ETYNAAMNAL RESAKMVSVM  660
KENIAKVTPP STRDNGSNQE DNSMKSPLSI SEAIPSLWPW QDSALHHYNL NDIGLPVNDL  720
NHPCIPPVDN FNGPPHNAVV LTCFKSMTWA IETKNSNPSS KVAVINMKLQ DYAQSPSGET  780
EVQFRVTKVT LEPMLQSMTY ISHQLTAPAN RVAVVNLKLQ DTKTSTGETQ VKFQVSRDML  840
GSMLSSMAYI REQL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004511159.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004511157.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_004511159.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_004511160.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_027192256.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1S2YWR7	0.0	A0A1S2YWR7_CICAR; protein FAR1-RELATED SEQUENCE 3-like
STRING	XP_004511157.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]