PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509918.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 286aa    MW: 30749.2 Da    PI: 8.0794
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509918.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.8e-11169216455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  XP_004509918.1 169 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 216
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-18163233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-10163220No hitNo description
Gene3DG3DSA:4.10.280.105.0E-18165234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-8169216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDPGAMMNEG SFPNGSGNTT PFSLAEIWQF PAAINGGGGG LGLRRPQFGN SLGQFGEFGP  60
GSNRDVNGPD QRVVLNHGVG VSGCKKRRDS EDDSPKCVST SNGGANVMND GDGKRSKALG  120
NRNEGGDGKV EGEASSGKPA EQNNKPPPPD PPKQDYIHVR ARRGQATDSH SLAERARREK  180
ISERMKILQD LVPGCNKVIG KALVLDEIIN YIQSLQRQVE FLSMKLEAVN SRLNTSIEAF  240
PPKDFGQQTF DLAGMPFVSQ ATREPSRGSS PEWLHMQVGG GFERTT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004509918.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1407540.0BT140754.1 Medicago truncatula clone JCVI-FLMt-7G3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509918.10.0transcription factor BHLH089-like
SwissprotQ84T087e-77BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A1S2YU150.0A0A1S2YU15_CICAR; transcription factor BHLH089-like
STRINGXP_004509918.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.15e-93BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]