PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004509207.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 21130.3 Da PI: 10.201 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.5e-19 | 99 | 148 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr++ +g+WvAeIrdp+ r +r++lg+f tae+Aa+a+++a+ +++g XP_004509207.1 99 KYRGVRQRA-WGKWVAEIRDPK----RaTRVWLGTFQTAEKAARAYDKAAIQFHG 148 8*****998.**********83....57**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.4E-31 | 98 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-22 | 99 | 157 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.58E-32 | 99 | 156 | No hit | No description |
Pfam | PF00847 | 1.7E-12 | 99 | 147 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.683 | 99 | 156 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-37 | 99 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 100 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MALPISNDIV GKLLPNKEQE NSIIVSTLIK VVSSSVVVHN SDIQLLNNNN INQQQRISTY 60 ASGSLQNQHD TATCLSCKIK GCLGCIFFIE KEKKEEKRKY RGVRQRAWGK WVAEIRDPKR 120 ATRVWLGTFQ TAEKAARAYD KAAIQFHGVR AKINFDFSDY EVGHVGDVVA GMKKTKTTIL 180 SFGSKSELA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 100 | 155 | 6 | 62 | ATERF1 |
3gcc_A | 1e-19 | 100 | 155 | 6 | 62 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004509207.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU571152 | 7e-83 | CU571152.5 M.truncatula DNA sequence from clone MTH2-44F3 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004509207.1 | 1e-139 | ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 2e-28 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A1S2YSI7 | 1e-138 | A0A1S2YSI7_CICAR; ethylene-responsive transcription factor ERF109-like | ||||
STRING | XP_004509207.1 | 1e-139 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2962 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 7e-24 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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