PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004509108.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WRKY | ||||||||
Protein Properties | Length: 333aa MW: 36443.2 Da PI: 10.3519 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99 | 3e-31 | 262 | 319 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d +++++tYegeHnh+ XP_004509108.1 262 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDASMLVVTYEGEHNHS 319 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 9.3E-17 | 212 | 258 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 8.6E-33 | 248 | 319 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.607 | 255 | 321 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.1E-26 | 257 | 320 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.8E-38 | 260 | 320 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.5E-27 | 262 | 318 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MAVELMTTGY RTDSFTAKAE ENAVQEAASG LESVEKLIKL LSEARHKYQS PSSSSSFSPS 60 NPNNPSFEIE RDCRAVADVA VSKFKRVISL LERTRTGHAR FRRAPLPQSP QNHPIQQTQQ 120 KKSKISESTI FNATPLQQIP PINLHRPFKD SSKTLNFSYS SSVAANSFIS SLTGGEIDSK 180 QPSSSSPAGT FQITNLSQVS SVGKPPLSSS LKRKCSSETL GSGKCGSSSS RCHCSKKSRK 240 LRLKRVVRVP AISLKMADIP PDDYSWRKYG QKPIKGSPHP RGYYKCSSVR GCPARKHVER 300 ALDDASMLVV TYEGEHNHSL SAPDATNLIL ESS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 248 | 320 | 2 | 73 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00275 | DAP | Transfer from AT2G23320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004509108.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT051268 | 1e-158 | BT051268.1 Medicago truncatula clone MTYF1_F2_F3_F41G-K-3 unknown mRNA. | |||
GenBank | BT145566 | 1e-158 | BT145566.1 Medicago truncatula clone JCVI-FLMt-11M6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004509108.1 | 0.0 | probable WRKY transcription factor 15 isoform X1 | ||||
Swissprot | O22176 | 2e-91 | WRK15_ARATH; Probable WRKY transcription factor 15 | ||||
TrEMBL | A0A1S2YSA1 | 0.0 | A0A1S2YSA1_CICAR; probable WRKY transcription factor 15 isoform X1 | ||||
STRING | XP_004509108.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 2e-68 | WRKY DNA-binding protein 15 |
Publications ? help Back to Top | |||
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